>SSH163 (SSH163Q) /CSM/SS/SSH1-C/SSH163Q.Seq.d/
XXXXXXXXXXTTTATATAAAATTTTAGTTGTTGGTGATATTGGTACTTGGTAAACTTCAA
TTATTAAAAGATTTGTTCATAATATATTCTCTATGCATTATAAATCAACCATTGGTGTAG
ATTTTGCATTAAAAGTGATTAATTGGGATCCCAAAAACCGAAGTTAGATTACAATTATGG
GATATTGCAGGTCAAGAAAGATTTGGATCAATGACAAGAGTTTATTATAAAGAAGCAGTT
GGAGCAATGATTACATTTGATGTTACTAGAATGAGTACATTTGAAGCAGTTGCTAAATGG
AAAGCAGATATTGATTCTAAAGTAACTTATGGTGCAGATGAAAAACCAATTCCAGTAGTT
TTATTAGCAAACAAATGTGATTTAGGTAAAGATGCATTCATCAAGACTGCAAACGATATG
GATAAATATTGTAAAGATAATGGTTTCATTGGTTGGTTCGAAACTAGTGCTAAAGAAAAT
ATGAATATTGAAAAAGCAGCACGTTTCTTGGTTGATCATATCTTAAAGAATGATGTTAGA
AGAAATCAACCAATTGAAGGTACAATTCAACCAGGCGATCTCAATAAACAACCACAACCA
ACTTCAACTGGTCCAAGTTGTTGTAAATAAAAAAAAAAAAAAATTTAAAAAATTTAAAAA

---yikf*llvilvlgklqllkdlfiiyslciinqplv*ilh*k*LIGIPKTEVRLQLWD
IAGQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVL
LANKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRR
NQPIEGTIQPGDLNKQPQPTSTGPSCCK*kkkki*ki*k

Frame A:
---lykilvvgdigtw*tsiikrfvhnifsmhykstigvdfalkvinwdpknrs*itimg
ycrsrkiwindksll*rsswsndyi*cy*neyi*ssc*mesry*f*snlwcr*ktnsssf
iskqm*fr*rcihqdckryg*il*r*wfhwlvrn*c*rkyey*ksstflg*sylke*c*k
kstn*rynstrrsq*ttttnfnwskll*ikkkknlknlk


Frame B:
---yikf*llvilvlgklqllkdlfiiyslciinqplv*ilh*k*LIGIPKTEVRLQLWD
IAGQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVL
LANKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRR
NQPIEGTIQPGDLNKQPQPTSTGPSCCK*kkkki*ki*k


Frame C:
---i*nfscw*ywylvnfny*kics*yilyal*inhwcrfciksd*lgsqkpkldynygi
lqvkkdldq*qefiikkqleq*lhlmlle*vhlkqllngkqililk*lmvqmknqfq*fy
*qtnvi*vkmhssrlqtiwinivkimvslvgsklvlkki*ilkkqhvswliis*rmmlee
inqlkvqfnqaisinnhnqlqlvqvvvnkkkkkfkkfk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH163 (SSH163Q) /CSM/SS/SSH1-C/SSH163Q.Seq.d/                       1225   0.0
SSC295 (SSC295Q) /CSM/SS/SSC2-D/SSC295Q.Seq.d/                       1185   0.0
SSI861 (SSI861Q) /CSM/SS/SSI8-C/SSI861Q.Seq.d/                       1168   0.0
SSF156 (SSF156Q) /CSM/SS/SSF1-C/SSF156Q.Seq.d/                       1104   0.0
SSC230 (SSC230Q) /CSM/SS/SSC2-B/SSC230Q.Seq.d/                       1039   0.0
SSA571 (SSA571Q) /CSM/SS/SSA5-C/SSA571Q.Seq.d/                       1031   0.0
SSF766 (SSF766Q) /CSM/SS/SSF7-C/SSF766Q.Seq.d/                       1013   0.0
SSG257 (SSG257Q) /CSM/SS/SSG2-C/SSG257Q.Seq.d/                        755   0.0
SSF581 (SSF581Q) /CSM/SS/SSF5-D/SSF581Q.Seq.d/                        537   e-152
SSL449 (SSL449Q) /CSM/SS/SSL4-C/SSL449Q.Seq.d/                        381   e-104

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF116859|AF116859.1 Dictyostelium discoideum small GTPase rabE (RabE) gene, complete cds.   852   0.0    3
U02925|U02925.1 Dictyostelium discoideum Ax3 Rab11 mRNA, complete cds.    46   3e-10  4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    46   8e-07  9
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    52   6e-06  11
BG665453|BG665453.1 DRACDA09 Rat DRG Library Rattus norvegicus cDNA clone DRACDA09 5', mRNA sequence.    42   7e-06  3
AX300905|AX300905.1 Sequence 11 from Patent WO0185989.             62   1e-05  1
CK366760|CK366760.1 AGENCOURT_17148349 NIH_MGC_231 Rattus norvegicus cDNA clone IMAGE:7099841 5', mRNA sequence.    42   1e-05  3
CK478425|CK478425.1 AGENCOURT_17583314 NIH_MGC_232 Rattus norvegicus cDNA clone IMAGE:7121653 5', mRNA sequence.    42   1e-05  3
CK473545|CK473545.1 AGENCOURT_17620431 NIH_MGC_236 Rattus norvegicus cDNA clone IMAGE:7128825 5', mRNA sequence.    42   1e-05  3
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    54   2e-05  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070513_1(BC070513|pid:none) Rattus norvegicus RAB38, member RA...   185   7e-62
AF136172_1(AF136172|pid:none) Homo sapiens rab-related GTP-bindi...   185   7e-62
(Q8QZZ8) RecName: Full=Ras-related protein Rab-38;  &AB232634_1(...   184   9e-62
DQ414572_1(DQ414572|pid:none) Suberites domuncula Rab32 gene, co...   179   6e-61
BC066502_1(BC066502|pid:none) Danio rerio RAB32, member RAS onco...   180   2e-60
BC049531_1(BC049531|pid:none) Danio rerio RAB32, member RAS onco...   176   3e-59
AY890954_1(AY890954|pid:none) Synthetic construct Homo sapiens c...   172   7e-58
(Q13637) RecName: Full=Ras-related protein Rab-32;  &AF498958_1(...   172   7e-58
AK312202_1(AK312202|pid:none) Homo sapiens cDNA, FLJ92490, highl...   173   2e-57
AY890955_1(AY890955|pid:none) Synthetic construct Homo sapiens c...   171   3e-57

 psg: 0.75  gvh: 0.34  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSH163 is nuc

>SSH163Z.Seq
----------TTTATATAAAATTTTAGTTGTTGGTGATATTGGTACTTGGTAAACTTCAA
TTATTAAAAGATTTGTTCATAATATATTCTCTATGCATTATAAATCAACCATTGGTGTAG
ATTTTGCATTAAAAGTGATTAATTGGGATCCCAAAAACCGAAGTTAGATTACAATTATGG
GATATTGCAGGTCAAGAAAGATTTGGATCAATGACAAGAGTTTATTATAAAGAAGCAGTT
GGAGCAATGATTACATTTGATGTTACTAGAATGAGTACATTTGAAGCAGTTGCTAAATGG
AAAGCAGATATTGATTCTAAAGTAACTTATGGTGCAGATGAAAAACCAATTCCAGTAGTT
TTATTAGCAAACAAATGTGATTTAGGTAAAGATGCATTCATCAAGACTGCAAACGATATG
GATAAATATTGTAAAGATAATGGTTTCATTGGTTGGTTCGAAACTAGTGCTAAAGAAAAT
ATGAATATTGAAAAAGCAGCACGTTTCTTGGTTGATCATATCTTAAAGAATGATGTTAGA
AGAAATCAACCAATTGAAGGTACAATTCAACCAGGCGATCTCAATAAACAACCACAACCA
ACTTCAACTGGTCCAAGTTGTTGTAAATAAAAAAAAAAAAAAATTTAAAAAATTTAAAAA