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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH160
Library SS
(Link to library)
Clone ID SSH160
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09958-1
Original site URL
Representative seq. ID SSH160Z
(Link to Original site)
Representative DNA sequence 
>SSH160 (SSH160Q) /CSM/SS/SSH1-C/SSH160Q.Seq.d/
XXXXXXXXXXTATATCAAACTTAACATTGGATTGCAATTATATTTTTGGTCTTACTTTTT
CAATTCAAGGTATTAGTTTCATTAGTTTAACTGAATATTCTGTTGGTGTTATGTTATTGG
TTGGTTTATTCTTTTATGATATTTTTTGGGTATTTGGTACAGATGTTATGGTTACAGTAG
CTAAAAGTTTTGATGCACCAATTAAATTACTTTTCCCAAAGGATATTTTTGCAGATGTTT
ATCAATTTTCAATGTTAGGTTTGGGTGATATCGTTTTACCAGGTATCTTTATCGCTTTAT
TATTACGTTTCGATAGACATATTCATCAAGAAAGCAGATCAAAAGGTCCAATGAAAAAAA
CTTATTTCAATTCAACTTTAATCGCTTATGCTTTAGGTTTATTCACTACAATTTTCGTTA
TGCACACTTTTAAAGCTGCTCAACCTGCATTATTATATTTAGTACCATTCTGTGTTGGTT
CATCAATGATTGTCTCAGCTATTAAAGGTCAATTCAAAAAATTACTTTGGTCAAATTTAG
ATACTGCCAAAGACAATACTAAAAAAACTAACTAAAGAAGGAAAAAAAAAAAAAAAAATT
GTTATAATAAATATAATAAAATAAATTTTAAAAAAAAAACAAAAAAAAAA
sequence update 1998. 4.29
Translated Amino Acid sequence 
---ISNLTLDCNYIFGLTFSIQGISFISLTEYSVGVMLLVGLFFYDIFWVFGTDVMVTVA
KSFDAPIKLLFPKDIFADVYQFSMLGLGDIVLPGIFIALLLRFDRHIHQESRSKGPMKKT
YFNSTLIAYALGLFTTIFVMHTFKAAQPALLYLVPFCVGSSMIVSAIKGQFKKLLWSNLD
TAKDNTKKTN*rrkkkkkncynkynkinfkkktkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ISNLTLDCNYIFGLTFSIQGISFISLTEYSVGVMLLVGLFFYDIFWVFGTDVMVTVA
KSFDAPIKLLFPKDIFADVYQFSMLGLGDIVLPGIFIALLLRFDRHIHQESRSKGPMKKT
YFNSTLIAYALGLFTTIFVMHTFKAAQPALLYLVPFCVGSSMIVSAIKGQFKKLLWSNLD
TAKDNTKKTN*rrkkkkkncynkynkinfkkktkkk


Frame B:
---yqt*hwiaiiflvllfqfkvlvslv*lnillvlcywlvysfmiffgylvqmlwlq*l
kvlmhqlnyfsqriflqmfinfqc*vwvisfyqvslslyyyvsidifikkadqkvq*kkl
isiql*slml*vyslqfslctllkllnlhyyi*yhsvlvhq*lsqllkvnsknyfgqi*i
lpktilkkltkegkkkkkiviiniik*ilkkkqkk


Frame C:
---iklniglqlyfwsyffnsry*fh*fn*ifcwcyvigwfill*yflgiwyrcygyss*
kf*ctn*itfpkgyfcrclsifnvrfg*yrftrylyrfiitfr*tyssrkqikrsneknl
fqfnfnrlcfrfihynfryahf*scstciiifstilcwfindclsy*rsiqkitlvkfry
cqrqy*kn*lkkekkkkkll**i**nkf*kknkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH160 (SSH160Q) /CSM/SS/SSH1-C/SSH160Q.Seq.d/                       1049   0.0
SSG594 (SSG594Q) /CSM/SS/SSG5-D/SSG594Q.Seq.d/                       1007   0.0
SFD764 (SFD764Q) /CSM/SF/SFD7-C/SFD764Q.Seq.d/                        977   0.0
VFM304 (VFM304Q) /CSM/VF/VFM3-A/VFM304Q.Seq.d/                        967   0.0
SFG448 (SFG448Q) /CSM/SF/SFG4-B/SFG448Q.Seq.d/                        961   0.0
SFI836 (SFI836Q) /CSM/SF/SFI8-B/SFI836Q.Seq.d/                        936   0.0
SSK571 (SSK571Q) /CSM/SS/SSK5-C/SSK571Q.Seq.d/                        928   0.0
AFF378 (AFF378Q) /CSM/AF/AFF3-D/AFF378Q.Seq.d/                        541   e-153
AFI733 (AFI733Q) /CSM/AF/AFI7-B/AFI733Q.Seq.d/                        371   e-102
AFN132 (AFN132Q) /CSM/AF/AFN1-B/AFN132Q.Seq.d/                        109   5e-23
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CD265939|CD265939.1 tab25g03.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:Q9VPQ7 Q9VPQ7 CG11840 PROTEIN. ;, mRNA sequence.    84   5e-19  4
CD285813|CD285813.1 tab07h06.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:Q9VPQ7 Q9VPQ7 CG11840 PROTEIN. ;, mRNA sequence.    84   6e-19  4
CB890025|CB890025.1 taa64g10.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:Q9VPQ7 Q9VPQ7 CG11840 PROTEIN. ;, mRNA sequence.    96   7e-19  3
CB889201|CB889201.1 taa47h06.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:Q9VPQ7 Q9VPQ7 CG11840 PROTEIN. ;, mRNA sequence.    74   4e-16  4
CD268304|CD268304.1 tab82h03.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:Q9VPQ7 Q9VPQ7 CG11840 PROTEIN. ;, mRNA sequence.    64   1e-11  3
BX538350|BX538350.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 1/4.    60   5e-08  2
BG224393|BG224393.1 kp45h05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:T05E11.5 CE06364 HYPOTHETICAL 52.8 KD PROTEIN T05E11.5 IN CHROMOSOME IV ;, mRNA sequence.    64   4e-07  2
BI510075|BI510075.1 BB170027A10G07 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170027A10G07 5', mRNA sequence.    54   1e-06  3
BQ451693|BQ451693.1 PfESToab07f09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9VPQ7 Q9VPQ7 CG11840 PROTEIN. ;, mRNA sequence.    60   4e-05  1
BU497334|BU497334.1 PfESToab62a03.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O81062 O81062 T18E12.21 PROTEIN. ;, mRNA sequence.    60   4e-05  1
dna update 2004. 2.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC056007_1(BC056007|pid:none) Xenopus laevis histocompatibility ...   186   5e-46
BT046082_1(BT046082|pid:none) Salmo salar clone ssal-rgf-541-080...   186   7e-46
BT059501_1(BT059501|pid:none) Salmo salar clone ssal-rgf-529-337...   186   7e-46
BC135444_1(BC135444|pid:none) Xenopus tropicalis hypothetical pr...   185   9e-46
AY926458_1(AY926458|pid:none) Danio rerio signal peptide peptida...   184   2e-45
AF515662_1(AF515662|pid:none) Mus musculus putative presenilin-l...   178   1e-43
AK049101_1(AK049101|pid:none) Mus musculus 0 day neonate cerebel...   178   1e-43
DQ168449_1(DQ168449|pid:none) Mus musculus signal peptide peptid...   178   1e-43
BC045195_1(BC045195|pid:none) Mus musculus histocompatibility 13...   178   1e-43
AF483214_1(AF483214|pid:none) Mus musculus minor histocompatibil...   178   1e-43
protein update 2009. 6.12
PSORT 

 psg: 0.75  gvh: 0.51  alm: 0.25  top: 0.47  tms: 0.27  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: peroxisomal
	  4.0 %: cytoplasmic

>> prediction for SSH160 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH160Z
3' end seq. 
>SSH160Z.Seq
----------TATATCAAACTTAACATTGGATTGCAATTATATTTTTGGTCTTACTTTTT
CAATTCAAGGTATTAGTTTCATTAGTTTAACTGAATATTCTGTTGGTGTTATGTTATTGG
TTGGTTTATTCTTTTATGATATTTTTTGGGTATTTGGTACAGATGTTATGGTTACAGTAG
CTAAAAGTTTTGATGCACCAATTAAATTACTTTTCCCAAAGGATATTTTTGCAGATGTTT
ATCAATTTTCAATGTTAGGTTTGGGTGATATCGTTTTACCAGGTATCTTTATCGCTTTAT
TATTACGTTTCGATAGACATATTCATCAAGAAAGCAGATCAAAAGGTCCAATGAAAAAAA
CTTATTTCAATTCAACTTTAATCGCTTATGCTTTAGGTTTATTCACTACAATTTTCGTTA
TGCACACTTTTAAAGCTGCTCAACCTGCATTATTATATTTAGTACCATTCTGTGTTGGTT
CATCAATGATTGTCTCAGCTATTAAAGGTCAATTCAAAAAATTACTTTGGTCAAATTTAG
ATACTGCCAAAGACAATACTAAAAAAACTAACTAAAGAAGGAAAAAAAAAAAAAAAAATT
GTTATAATAAATATAATAAAATAAATTTTAAAAAAAAAACAAAAAAAAAA
Length of 3' end seq. 640
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -