>SSH153 (SSH153Q) /CSM/SS/SSH1-C/SSH153Q.Seq.d/
ATTAAATTGTTAGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGTAG
AGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTG
TAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTA
TTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGG
CTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGA
AAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAA
ATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAAT
TGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAAT
ACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAAC
ATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTT
AAAAATAAAAAAAAA

*ivrky*n*KMDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFI
SLDKDKDGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVN
KNNPDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqh
l*fsflkkfk*ink*kiif*k*kk

Frame A:
ikllenikikkwivqlqkm*ric*enliqmvmvilhlmkl*nv*rkpvqkihyvlplqcl
fllirirmelfq*krfmairlmllqrnckrqlttsvtts*kamtlirmegshgmkyaig*
iktiqmqllhl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*llin
iynfhf*knlnk*inkk*sfknkkk


Frame B:
lnc*kilklknglcnykrcrgyvkki*fkw*w*yyi**scktfegnrfkrsitcclfnvy
fs**g*gwnyfnkrdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlgk
*kqsrcncstydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*st
fiififkki*ink*iknnllkikk


Frame C:
*ivrky*n*KMDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFI
SLDKDKDGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVN
KNNPDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqh
l*fsflkkfk*ink*kiif*k*kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                       1106   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                       1106   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                       1106   0.0
SSH153 (SSH153Q) /CSM/SS/SSH1-C/SSH153Q.Seq.d/                       1106   0.0
SSG624 (SSG624Q) /CSM/SS/SSG6-A/SSG624Q.Seq.d/                       1106   0.0
SSF848 (SSF848Q) /CSM/SS/SSF8-B/SSF848Q.Seq.d/                       1106   0.0
SSF715 (SSF715Q) /CSM/SS/SSF7-A/SSF715Q.Seq.d/                       1106   0.0
SSF426 (SSF426Q) /CSM/SS/SSF4-B/SSF426Q.Seq.d/                       1106   0.0
SSE622 (SSE622Q) /CSM/SS/SSE6-A/SSE622Q.Seq.d/                       1106   0.0
SSE238 (SSE238Q) /CSM/SS/SSE2-B/SSE238Q.Seq.d/                       1106   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.  1067  0.0  1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   989  0.0  2
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38  0.008  7
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    34  0.009  10
AX458553|AX458553.1 Sequence 99 from Patent WO0246454.            34  0.025  4
BQ875038|BQ875038.1 QGI6P19.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI6P19, mRNA sequence.    42  0.030  2
AQ935960|AQ935960.1 CpG2743A CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence.    38  0.033  2
AC026535|AC026535.3 Homo sapiens chromosome 1 clone RP11-368K17 map 1, WORKING DRAFT SEQUENCE, 12 unordered pieces.    36  0.046  5
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    32  0.070  10
AL354807|AL354807.6 Human DNA sequence from clone RP11-522F22 on chromosome 13.    42  0.079  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    79   8e-14
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    69   8e-11
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    69   1e-10
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    69   1e-10
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    67   3e-10
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     67   3e-10
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha;             57   4e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    56   9e-07
EF523472_1(EF523472|pid:none) Synthetic construct putative aller...    55   2e-06
FN357341_31(FN357341|pid:none) Schistosoma mansoni genome sequen...    55   2e-06

 psg: 0.75  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH153 is nuc

>SSH153E.Seq
ATTAAATTGTTAGAAAATATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGTAG
AGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTG
TAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTA
TTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGG
CTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGA
AAGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAA
ATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAAT
TGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAAT
ACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAAC
ATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTT
AAAAATAAAAAAAAA