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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH152
Library SS
(Link to library)
Clone ID SSH152
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12238-1
Original site URL
Representative seq. ID SSH152P
(Link to Original site)
Representative DNA sequence 
>SSH152 (SSH152Q) /CSM/SS/SSH1-C/SSH152Q.Seq.d/
CGAAACAAAAGAACAAGTTATTACACCATGGGAAGTTGAAGCAGCACCAGGTGGTAGTGT
AGATTATATGAAACTTGTTGATCAATTTGGTTCAACTGTTATTAGTGAAGAACTCATTGC
TCGTTTTGAAAAAGTTACTGGTAAAAGAGCACATCACTTTTTACGTAGAGGAATCTTTTT
CTCTCATAGAGATTTAAAAGAAATTTTAGATCATCATGAATCAGGTAAAAAATGGTTTTT
ATATACAGGTAGAGGACCATCAAGTGGTAGTTTACATTTTGGACATTTATTACCATTTAC
ATTTACAAAATATCTTCAAGATGCATTCAAXXXXXXXXXXGTTGCTTTTTNNAAAATCAN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAANAAAAAAAAAAAAAAAANAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
ETKEQVITPWEVEAAPGGSVDYMKLVDQFGSTVISEELIARFEKVTGKRAHHFLRRGIFF
SHRDLKEILDHHESGKKWFLYTGRGPSSGSLHFGHLLPFTFTKYLQDAF---

---LLFXKSXFFFFFFFFFFKXKKKKKXKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
rnkrtsyytmgs*sstrw*crlyetc*siwfncy**rthcsf*ksyw*kstslft*rnlf
ls*rfkrnfrss*ir*kmvfiyr*rtikw*ftfwtfitiyiykissrciq---

---vafxkixffffffffff*kxkkkkxkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
kkkkkkkkk

Frame B:
ETKEQVITPWEVEAAPGGSVDYMKLVDQFGSTVISEELIARFEKVTGKRAHHFLRRGIFF
SHRDLKEILDHHESGKKWFLYTGRGPSSGSLHFGHLLPFTFTKYLQDAF---

---LLFXKSXFFFFFFFFFFKXKKKKKXKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKK

Frame C:
kqknkllhhgklkqhqvvv*ii*nllinlvqlllvknsllvlkkllvkehitfyveesfs
liei*kkf*iimnqvkngfyiqvedhqvvvyildiyyhlhlqnifkmhs---

---cfxxnxfffffffffflkxkkkkkxkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
kkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH488 (VSH488Q) /CSM/VS/VSH4-D/VSH488Q.Seq.d/                        654   0.0
VFM423 (VFM423Q) /CSM/VF/VFM4-A/VFM423Q.Seq.d/                        654   0.0
VFI551 (VFI551Q) /CSM/VF/VFI5-C/VFI551Q.Seq.d/                        654   0.0
VFB889 (VFB889Q) /CSM/VF/VFB8-D/VFB889Q.Seq.d/                        654   0.0
SSH152 (SSH152Q) /CSM/SS/SSH1-C/SSH152Q.Seq.d/                        654   0.0
VFA133 (VFA133Q) /CSM/VF/VFA1-B/VFA133Q.Seq.d/                        646   0.0
VFB371 (VFB371Q) /CSM/VF/VFB3-C/VFB371Q.Seq.d/                        640   0.0
SFI849 (SFI849Q) /CSM/SF/SFI8-C/SFI849Q.Seq.d/                        624   e-178
AFF628 (AFF628Q) /CSM/AF/AFF6-B/AFF628Q.Seq.d/                        617   e-176
SFH604 (SFH604Q) /CSM/SF/SFH6-A/SFH604Q.Seq.d/                        476   e-133
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH148367|BH148367.1 ENTPE87TR Entamoeba histolytica Sheared DNA Entamoeba histolyticagenomic, genomic survey sequence.    92   8e-16  2
AZ672349|AZ672349.1 ENTHE16TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    92   1e-14  1
BH136905|BH136905.1 ENTND83TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    92   1e-14  1
AZ689759|AZ689759.1 ENTJW76TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    92   1e-14  1
BH152108|BH152108.1 ENTQH88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    92   1e-14  1
AZ528502|AZ528502.1 ENTBQ08TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    92   1e-14  1
BH157214|BH157214.1 ENTSH32TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    92   1e-14  1
AZ544065|AZ544065.1 ENTDT21TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    62   9e-06  1
CD450056|CD450056.1 USDA-FP_102017 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-28_B08 5', mRNA sequence.    46   9e-06  2
CD327296|CD327296.1 AGENCOURT_14144271 NICHD_XGC_Eye1 Xenopus laevis cDNA clone IMAGE:6949024 5', mRNA sequence.    52   0.008  1
dna update 2004. 2.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000586_171(CP000586|pid:none) Ostreococcus lucimarinus CCE9901...   149   3e-35
AE014297_919(AE014297|pid:none) Drosophila melanogaster chromoso...   147   2e-34
AF125157_1(AF125157|pid:none) Drosophila melanogaster tryptophan...   147   2e-34
AP008218_1042(AP008218|pid:none) Oryza sativa (japonica cultivar...   147   2e-34
EF145224_1(EF145224|pid:none) Populus trichocarpa clone WS01121_...   145   5e-34
AC011437_7(AC011437|pid:none) Arabidopsis thaliana chromosome II...   144   1e-33
CR954206_195(CR954206|pid:none) Ostreococcus tauri strain OTTH05...   143   2e-33
EU960838_1(EU960838|pid:none) Zea mays clone 228969 tryptophanyl...   143   2e-33
CR382122_308(CR382122|pid:none) Kluyveromyces lactis strain NRRL...   142   7e-33
CS494676_1(CS494676|pid:none) Sequence 21 from Patent WO20060162...   140   3e-32
protein update 2009. 6.12
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.30  top: 1.33  tms: 0.07  mit: 0.13  mip: 0.00
 nuc: 4.92  erl: 0.00  erm: 1.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 56.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SSH152 is nuc
5' end seq. ID SSH152F
5' end seq. 
>SSH152F.Seq
CGAAACAAAAGAACAAGTTATTACACCATGGGAAGTTGAAGCAGCACCAGGTGGTAGTGT
AGATTATATGAAACTTGTTGATCAATTTGGTTCAACTGTTATTAGTGAAGAACTCATTGC
TCGTTTTGAAAAAGTTACTGGTAAAAGAGCACATCACTTTTTACGTAGAGGAATCTTTTT
CTCTCATAGAGATTTAAAAGAAATTTTAGATCATCATGAATCAGGTAAAAAATGGTTTTT
ATATACAGGTAGAGGACCATCAAGTGGTAGTTTACATTTTGGACATTTATTACCATTTAC
ATTTACAAAATATCTTCAAGATGCATTCAA----------
Length of 5' end seq. 330
3' end seq. ID SSH152Z
3' end seq. 
>SSH152Z.Seq
----------GTTGCTTTTTNNAAAATCANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTAAAAANAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 199
Connected seq. ID SSH152P
Connected seq. 
>SSH152P.Seq
CGAAACAAAAGAACAAGTTATTACACCATGGGAAGTTGAAGCAGCACCAGGTGGTAGTGT
AGATTATATGAAACTTGTTGATCAATTTGGTTCAACTGTTATTAGTGAAGAACTCATTGC
TCGTTTTGAAAAAGTTACTGGTAAAAGAGCACATCACTTTTTACGTAGAGGAATCTTTTT
CTCTCATAGAGATTTAAAAGAAATTTTAGATCATCATGAATCAGGTAAAAAATGGTTTTT
ATATACAGGTAGAGGACCATCAAGTGGTAGTTTACATTTTGGACATTTATTACCATTTAC
ATTTACAAAATATCTTCAAGATGCATTCAA----------GTTGCTTTTTNNAAAATCAN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAANAAAAAAAAAAAAAAAANAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 529
Full length Seq ID -
Full length Seq. -
Length of full length seq. -