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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH151
Library SS
(Link to library)
Clone ID SSH151
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01152-1
Original site URL
Representative seq. ID SSH151P
(Link to Original site)
Representative DNA sequence 
>SSH151 (SSH151Q) /CSM/SS/SSH1-C/SSH151Q.Seq.d/
ATCAGACAATAGTAATGGTACAGAGATTGTTAGAGAAAAGATTCAAAAGTTCAATATAGA
TATGGATGTTTCATCATCAGACGACGATGATGAAGAAGAGGCTAAACCAGTTAGTGGATT
TATGAAATATTTCAATGTACTCACTGGTAATCGTGTTATTGACAAACAAGATTTGGAGCC
AATTTTAGCAGACTTTAAATTACATTTAACAAAAAAGAACGTTGCACCAGACGTTGCCGA
TAAGATTGTTCAATCGATTGGCACAGGTTTAGAGGGCAAGAAATTGXXXXXXXXXXTGTT
GTTAGGAGTACAAATTTGGCAAAGGTTTGCTATTGGTTGACTGCAAATGGTTACAAATGT
ATGTTGGCTGCATGTGATACTTTTAGATCAGGTGCCATTGAACAATTGAAAACTCATGCT
GACCGTTTGAATGTCCATCTCTTTGAAAGAGGTTATAGTAAAGATGCCGCTTCAGTAGCC
CAAGATGCAATTGCTTTCGCTAAAGATACCGGCTATGATGTGGTTTTGATCGATACAACT
GGTCGTATGCAAAATAATGAACCATTAATGAAAGCACTCTCAAAATTGGTCAATCAAAAC
AATGTCGATTTGGTCTTATTTGTAGGTGAAGCTTTAGTTGGTAATGATGGTGTTGATCAA
TTAACTAAATTCGATAAATCCCTATCCCTTTTAGCAAATACAACTCAAACTCATATTCGT
ACAATCGATGGTATCATTCTCACTAAATTTGATACAATTGACGATAAAGTTGGTGCTGCC
ATCTCAATGGTTTATTCAACTGGTCATCCAATCTTATTTTTAGGTACTGGTCAAAATTAT
ACAGATTTAAAGAGAATGAATATTAAATCAGTTGTTAAATCATTATTACATTAAAAAATA
ATTTTAAAAAAATAAAAAAAATAATTCAAAATCACCAAAATTAATAATAC
sequence update 1998. 9.10
Translated Amino Acid sequence 
SDNSNGTEIVREKIQKFNIDMDVSSSDDDDEEEAKPVSGFMKYFNVLTGNRVIDKQDLEP
ILADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKL---

---VVRSTNLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHLFERGYSKDA
ASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLVNQNNVDLVLFVGEALVGND
GVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFDTIDDKVGAAISMVYSTGHPILFLGT
GQNYTDLKRMNIKSVVKSLLH*kiilkk*kk*fkitkinn
Translated Amino Acid sequence (All Frames) 
Frame A:
irq**wyrdc*rkdskvqyrygcfiirrr**rrg*ts*wiyeifqcthw*scy*qtrfga
nfsrl*itfnkkerctrrcr*dcsidwhrfrgqei---

---cc*eykfgkglllvdckwlqmyvgcm*yf*irch*tiensc*pfecpsl*krl**rc
rfssprcncfr*ryrl*cgfdrynwsyak**tinestlkigqskqcrfglicr*sfsw**
wc*sin*ir*ipipfskynsnsysynrwyhsh*i*yn*r*swcchlnglfnwssnlifry
wsklyrfkeney*isc*iiitlknnfkkikkiiqnhqn**y

Frame B:
SDNSNGTEIVREKIQKFNIDMDVSSSDDDDEEEAKPVSGFMKYFNVLTGNRVIDKQDLEP
ILADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKL---

---VVRSTNLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHLFERGYSKDA
ASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLVNQNNVDLVLFVGEALVGND
GVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFDTIDDKVGAAISMVYSTGHPILFLGT
GQNYTDLKRMNIKSVVKSLLH*kiilkk*kk*fkitkinn

Frame C:
qtivmvqrllekrfkssi*iwmfhhqttmmkkrlnqlvdl*nismyslvivlltnkiwsq
f*qtlnyi*qkrtlhqtlpirlfnrlaqv*rarn---

---llgvqiwqrfaig*lqmvtnvcwlhvilldqvplnn*klmltv*msislkevivkmp
lq*pkmqllslkipammwf*siqlvvckimnh**khsqnwsiktmsiwsyl*vkl*lvmm
vlin*lnsinpypf*qiqlklifvqsmvsfslnliqltiklvlpsqwfiqlviqsyf*vl
vkiiqi*re*ilnqllnhyyikk*f*knkknnskspklii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH151 (SSH151Q) /CSM/SS/SSH1-C/SSH151Q.Seq.d/                       1709   0.0
SFE777 (SFE777Q) /CSM/SF/SFE7-D/SFE777Q.Seq.d/                       1100   0.0
SLB804 (SLB804Q) /CSM/SL/SLB8-A/SLB804Q.Seq.d/                        942   0.0
VSG729 (VSG729Q) /CSM/VS/VSG7-B/VSG729Q.Seq.d/                        323   3e-87
VHA784 (VHA784Q) /CSM/VH/VHA7-D/VHA784Q.Seq.d/                         38   0.24
SLG266 (SLG266Q) /CSM/SL/SLG2-C/SLG266Q.Seq.d/                         38   0.24
AHE130 (AHE130Q) /CSM/AH/AHE1-B/AHE130Q.Seq.d/                         38   0.24
AHC715 (AHC715Q) /CSM/AH/AHC7-A/AHC715Q.Seq.d/                         38   0.24
VSI392 (VSI392Q) /CSM/VS/VSI3-D/VSI392Q.Seq.d/                         36   0.95
VHP464 (VHP464Q) /CSM/VH/VHP4-C/VHP464Q.Seq.d/                         36   0.95
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.  1166   0.0    2
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.  1166   0.0    2
CD062033|CD062033.1 MA1-0023U-M005-G04-U.B MA1-0023 Schistosoma mansoni cDNA clone MA1-0023U-M005-G04.B, mRNA sequence.    50   5e-14  4
BU801923|BU801923.1 SJFAAE03 SJF Schistosoma japonicum cDNA, mRNA sequence.    58   9e-14  3
CD080439|CD080439.1 MA3-9999U-M310-A02-U.B MA3-0001 Schistosoma mansoni cDNA clone MA3-9999U-M310-A02.B, mRNA sequence.    50   1e-13  4
CK150409|CK150409.1 CsmgEST01477 Culicoides sonorensis female serum-fed midgut cDNA Library Culicoides sonorensis cDNA, mRNA sequence.    52   2e-13  3
CD062134|CD062134.1 MA1-0024G-M011-B06-U.B MA1-0024 Schistosoma mansoni cDNA clone MA1-0024G-M011-B06.B, mRNA sequence.    44   3e-12  4
BU722329|BU722329.1 SJMAGA11 SJM Schistosoma japonicum cDNA, mRNA sequence.    58   1e-11  3
CD062284|CD062284.1 MA1-0024P-M009-E03-U.B MA1-0024 Schistosoma mansoni cDNA clone MA1-0024P-M009-E03.B, mRNA sequence.    40   3e-10  4
CD062036|CD062036.1 MA1-0023U-M005-G08-U.B MA1-0023 Schistosoma mansoni cDNA clone MA1-0023U-M005-G08.B, mRNA sequence.    50   5e-10  3
dna update 2004. 2.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZR7) RecName: Full=Signal recognition particle receptor subu...   379   e-104
A85358(A85358) hypothetical protein AT4g30600 [imported] - Arabi...   251   2e-65
CP001329_142(CP001329|pid:none) Micromonas sp. RCC299 chromosome...   250   4e-65
AC136953_6(AC136953|pid:none) Medicago truncatula clone mth2-20h...   250   4e-65
AP004643_15(AP004643|pid:none) Oryza sativa Japonica Group genom...   249   1e-64
(Q9U5L1) RecName: Full=Signal recognition particle receptor subu...   248   2e-64
AL844509_650(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...   247   5e-64
AM910993_40(AM910993|pid:none) Plasmodium knowlesi strain H chro...   243   9e-63
CR859091_1(CR859091|pid:none) Pongo abelii mRNA; cDNA DKFZp459J2...   238   2e-61
CR457025_1(CR457025|pid:none) Homo sapiens full open reading fra...   238   2e-61
protein update 2009. 6.12
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSH151 is cyt
5' end seq. ID SSH151F
5' end seq. 
>SSH151F.Seq
ATCAGACAATAGTAATGGTACAGAGATTGTTAGAGAAAAGATTCAAAAGTTCAATATAGA
TATGGATGTTTCATCATCAGACGACGATGATGAAGAAGAGGCTAAACCAGTTAGTGGATT
TATGAAATATTTCAATGTACTCACTGGTAATCGTGTTATTGACAAACAAGATTTGGAGCC
AATTTTAGCAGACTTTAAATTACATTTAACAAAAAAGAACGTTGCACCAGACGTTGCCGA
TAAGATTGTTCAATCGATTGGCACAGGTTTAGAGGGCAAGAAATTG----------
Length of 5' end seq. 286
3' end seq. ID SSH151Z
3' end seq. 
>SSH151Z.Seq
----------TGTTGTTAGGAGTACAAATTTGGCAAAGGTTTGCTATTGGTTGACTGCAA
ATGGTTACAAATGTATGTTGGCTGCATGTGATACTTTTAGATCAGGTGCCATTGAACAAT
TGAAAACTCATGCTGACCGTTTGAATGTCCATCTCTTTGAAAGAGGTTATAGTAAAGATG
CCGCTTCAGTAGCCCAAGATGCAATTGCTTTCGCTAAAGATACCGGCTATGATGTGGTTT
TGATCGATACAACTGGTCGTATGCAAAATAATGAACCATTAATGAAAGCACTCTCAAAAT
TGGTCAATCAAAACAATGTCGATTTGGTCTTATTTGTAGGTGAAGCTTTAGTTGGTAATG
ATGGTGTTGATCAATTAACTAAATTCGATAAATCCCTATCCCTTTTAGCAAATACAACTC
AAACTCATATTCGTACAATCGATGGTATCATTCTCACTAAATTTGATACAATTGACGATA
AAGTTGGTGCTGCCATCTCAATGGTTTATTCAACTGGTCATCCAATCTTATTTTTAGGTA
CTGGTCAAAATTATACAGATTTAAAGAGAATGAATATTAAATCAGTTGTTAAATCATTAT
TACATTAAAAAATAATTTTAAAAAAATAAAAAAAATAATTCAAAATCACCAAAATTAATA
ATAC
Length of 3' end seq. 654
Connected seq. ID SSH151P
Connected seq. 
>SSH151P.Seq
ATCAGACAATAGTAATGGTACAGAGATTGTTAGAGAAAAGATTCAAAAGTTCAATATAGA
TATGGATGTTTCATCATCAGACGACGATGATGAAGAAGAGGCTAAACCAGTTAGTGGATT
TATGAAATATTTCAATGTACTCACTGGTAATCGTGTTATTGACAAACAAGATTTGGAGCC
AATTTTAGCAGACTTTAAATTACATTTAACAAAAAAGAACGTTGCACCAGACGTTGCCGA
TAAGATTGTTCAATCGATTGGCACAGGTTTAGAGGGCAAGAAATTG----------TGTT
GTTAGGAGTACAAATTTGGCAAAGGTTTGCTATTGGTTGACTGCAAATGGTTACAAATGT
ATGTTGGCTGCATGTGATACTTTTAGATCAGGTGCCATTGAACAATTGAAAACTCATGCT
GACCGTTTGAATGTCCATCTCTTTGAAAGAGGTTATAGTAAAGATGCCGCTTCAGTAGCC
CAAGATGCAATTGCTTTCGCTAAAGATACCGGCTATGATGTGGTTTTGATCGATACAACT
GGTCGTATGCAAAATAATGAACCATTAATGAAAGCACTCTCAAAATTGGTCAATCAAAAC
AATGTCGATTTGGTCTTATTTGTAGGTGAAGCTTTAGTTGGTAATGATGGTGTTGATCAA
TTAACTAAATTCGATAAATCCCTATCCCTTTTAGCAAATACAACTCAAACTCATATTCGT
ACAATCGATGGTATCATTCTCACTAAATTTGATACAATTGACGATAAAGTTGGTGCTGCC
ATCTCAATGGTTTATTCAACTGGTCATCCAATCTTATTTTTAGGTACTGGTCAAAATTAT
ACAGATTTAAAGAGAATGAATATTAAATCAGTTGTTAAATCATTATTACATTAAAAAATA
ATTTTAAAAAAATAAAAAAAATAATTCAAAATCACCAAAATTAATAATAC
Length of connected seq. 940
Full length Seq ID -
Full length Seq. -
Length of full length seq. -