AFL401
Library AF
(Link to library)
Clone ID AFL401
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16408-1
Original site URL
Representative seq. ID AFL401P
(Link to Original site)
Representative DNA sequence
>AFL401 (AFL401Q) /CSM/AF/AFL4-A/AFL401Q.Seq.d/
ACTGGTGGTGATAATACTGGTACAGTTGGAAGAGGTGCAGTTACAACCGCATCTTCTGTA
GCTAATACAGTTGGTGAATTCCTTGGTGGATCTAGAACTGGTGGTTCCTCATCTGCTGGT
ACAGTCGGTAACGTAATCTCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAAT
GGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCT
GGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATT
GCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCA
TCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAA
CAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAA
GTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAA
CAAAATCAAGAAGATXXXXXXXXXXATAAGATTGTAACTCAAATGGGAAATGTTGAAAAT
AATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAA
AATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAA
AATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAA
GAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAAT
CAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTT
GAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATT
CAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGAT
GCTGAATTGGCTAAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAA
ACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATNAACAACAAAT
CCAAGAACAACAAGATAATTAATCAAGAAAAAAATCAACAATTATTGAACAAGAACAAAA
TCAAAAANNATTNATCATTCTTTCTTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
TGGDNTGTVGRGAVTTASSVANTVGEFLGGSRTGGSSSAGTVGNVISDSYTSIGKIASGN
GNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIP
SQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQ
QNQED---

---KIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAA
KLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVI
KEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKK**tresr*efssrettis*p
n*ksikkystxttnprttr*likkkinny*trtkskxixhsff


Translated Amino Acid sequence (All Frames)
Frame A:
TGGDNTGTVGRGAVTTASSVANTVGEFLGGSRTGGSSSAGTVGNVISDSYTSIGKIASGN
GNSLSETIGTTGDTLAHTFAGTDSVGVTGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIP
SQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQ
QNQED---

---irl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkml
lnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlkl
sknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlknnkqenqdenlvqekqqspd
qiknqlkniqhxqqiqeqqdn*srkkstiieqeqnqkxxiilsf

Frame B:
lvviilvqleevqlqphll*liqlvnslvdlelvvphllvqsvt*slilihqlvklhlvm
viplvrplvplvihwlihslvqiqsv*lvsi*lqrlli*llvvnltlinntlinptvqfh
hkimkklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvillrkckfnvkikilvn
kikk---

---*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc
*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*sy
qrisktrstketknstrercclle*c*ksst*igc*ig*kiinkrikmri*fkrnnnllt
klkin*kifnxnnksknnkiinqeknqqllnknkikxxxsffl

Frame C:
ww**ywyswkrcsynrifcs*ysw*ipwwi*nwwflicwysr*rnl*flyinw*nciw*w
*fp**dhwyhw*yigsyirwyrfsrcnwfpynykdf*fdcww*i*l*stih**ilrfnsi
tr**rn*keitkcsstitrtitcnlsinei*rskkfr**sns*ys*gnanst*ksrywst
ksrr---

---KIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAA
KLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVI
KEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKK**tresr*efssrettis*p
n*ksikkystxttnprttr*likkkinny*trtkskxixhsff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFL401 (AFL401Q) /CSM/AF/AFL4-A/AFL401Q.Seq.d/ 1530 0.0
SFJ694 (SFJ694Q) /CSM/SF/SFJ6-D/SFJ694Q.Seq.d/ 1100 0.0
SFH241 (SFH241Q) /CSM/SF/SFH2-B/SFH241Q.Seq.d/ 1100 0.0
SFC316 (SFC316Q) /CSM/SF/SFC3-A/SFC316Q.Seq.d/ 1100 0.0
AFK651 (AFK651Q) /CSM/AF/AFK6-C/AFK651Q.Seq.d/ 1100 0.0
AFC432 (AFC432Q) /CSM/AF/AFC4-B/AFC432Q.Seq.d/ 1100 0.0
AFA655 (AFA655Q) /CSM/AF/AFA6-C/AFA655Q.Seq.d/ 1100 0.0
SFG227 (SFG227Q) /CSM/SF/SFG2-B/SFG227Q.Seq.d/ 1066 0.0
SFI544 (SFI544Q) /CSM/SF/SFI5-B/SFI544Q.Seq.d/ 1065 0.0
AFL424 (AFL424Q) /CSM/AF/AFL4-A/AFL424Q.Seq.d/ 1061 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 1092 0.0 5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 103 4e-22 16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 4e-08 21
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 38 7e-08 15
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 34 2e-07 28
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 1e-05 20
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 30 2e-05 18
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 5e-05 19
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence. 38 7e-05 13
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 32 1e-04 15
dna update 2004. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 308 3e-82
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p... 50 2e-04
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik... 46 0.002
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028... 45 0.006
AF045453_1(AF045453|pid:none) Dictyostelium discoideum protein k... 44 0.011
(Q54QV3) RecName: Full=Probable serine/threonine-protein kinase ... 44 0.011
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat... 44 0.014
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes... 44 0.014
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM... 43 0.019
AJ410493_50(AJ410493|pid:none) Saimiriine herpesvirus 2 complete... 43 0.019
protein update 2009. 4.25
PSORT

psg: 0.88 gvh: 0.47 alm: 0.42 top: 0.60 tms: 0.00 mit: 0.22 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for AFL401 is nuc

5' end seq. ID AFL401F
5' end seq.
>AFL401F.Seq
ACTGGTGGTGATAATACTGGTACAGTTGGAAGAGGTGCAGTTACAACCGCATCTTCTGTA
GCTAATACAGTTGGTGAATTCCTTGGTGGATCTAGAACTGGTGGTTCCTCATCTGCTGGT
ACAGTCGGTAACGTAATCTCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAAT
GGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCT
GGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATT
GCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCA
TCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAA
CAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAA
GTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAA
CAAAATCAAGAAGAT----------
Length of 5' end seq. 555
3' end seq. ID AFL401Z
3' end seq.
>AFL401Z.Seq
----------ATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGA
CCAAATTAAAAATCAATTAAAAAATATTCAACATNAACAACAAATCCAAGAACAACAAGA
TAATTAATCAAGAAAAAAATCAACAATTATTGAACAAGAACAAAATCAAAAANNATTNAT
CATTCTTTCTTTT
Length of 3' end seq. 663
Connected seq. ID AFL401P
Connected seq.
>AFL401P.Seq
ACTGGTGGTGATAATACTGGTACAGTTGGAAGAGGTGCAGTTACAACCGCATCTTCTGTA
GCTAATACAGTTGGTGAATTCCTTGGTGGATCTAGAACTGGTGGTTCCTCATCTGCTGGT
ACAGTCGGTAACGTAATCTCTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAAT
GGTAATTCCCTTAGTGAGACCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCT
GGTACAGATTCAGTCGGTGTAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATT
GCTGGTGGTAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCA
TCACAAGATAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAA
CAATCACCTGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAA
GTAATTCGTAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAA
CAAAATCAAGAAGAT----------ATAAGATTGTAACTCAAATGGGAAATGTTGAAAAT
AATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAA
AATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAA
AATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAA
GAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAAT
CAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTT
GAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATT
CAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGAT
GCTGAATTGGCTAAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAA
ACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATNAACAACAAAT
CCAAGAACAACAAGATAATTAATCAAGAAAAAAATCAACAATTATTGAACAAGAACAAAA
TCAAAAANNATTNATCATTCTTTCTTTT
Length of connected seq. 1218
Full length Seq ID -
Full length Seq. -
Length of full length seq. -