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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH138
Library SS
(Link to library)
Clone ID SSH138
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01120-1
Original site URL
Representative seq. ID SSH138P
(Link to Original site)
Representative DNA sequence 
>SSH138 (SSH138Q) /CSM/SS/SSH1-B/SSH138Q.Seq.d/
TTTTTTTTTTCCTCACACAAAAATAAATAAAAAAATAAAAATAAAAATAAATAATTATAA
TTGAAGAAAAAGAAGAATAATAATAATAATAGAATATTAAAATAATAAAATAAACTTATA
AAAAAATAAAAAAAGTTTTTTAAATAAATGTTATCCTCAATGACAGATATTAGAAAAAGA
GTAACAGTATTTCAAAATGGTAAAAGAGTTGGGGGTAAAGCTATAAGTTTACCAAAGAAA
TGGTCAGAATTTTTAAAGATTGTATCAAAGAAATTAAATATACCAGCCTCAAGAATCTAT
AATGAAGATGGTGGAGAAATCGATGAAATTGAATCAATAGTTGCAAAAGAGATATTATAT
GCAAGTTGTGGTGAACATTXXXXXXXXXXGGAAAGGATGTGATTTCANTTCTTCTTTAAC
TTTCAAGTTCAAATTCANGTTTAAGATGTCAAGGTTTAAATTTAGCGGGTGTGAATCTAT
CAAAATTGGATTTAGGAAATATTAATTTCAAAATGACCAATTTCAANGAACCAATCTTTC
AAAATGTAATCTAGATAATGCCCTCCTACAGGAGGCTGATCTATCAGGTGCAAATTTAAC
AGGTGCAAGTTTAAGAGGTTCAAATTTAACAGGTGCAAATCTAGAGGATTGTATATTAAA
AGGTGCAAACTTTGAAGATAGAGGTGGTCAAAGAGCAACCCTCGAAAATGTAAACTTTAA
AAATGCTTCACTCGAAGAAGCAAACTTTAGTGGTGCAAACCTTAGAGTTTGTAATTTTAA
AAGTGCAAACTTGGAAAATTGTAATTTTCGTGGTGCTGATTTAGCTGGTGCAAATTTAGA
AGATTGTAATCTTAGAGGAGCAAACCTTCATAAAGCAAATTTAATTGGTGTAAATTTAAA
AGGTGCAAATTTCGATATTAGAACTGTTAGTTCAAGATAATTTTAAAAAAAAAAAAATAT
ATAATTCAACATATAAATACAATTACAATATATATATAATATTAAAAAAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
fffsshknk*knknknk*l*lkkkknnnnnrilk**nklikk*kkffk*MLSSMTDIRKR
VTVFQNGKRVGGKAISLPKKWSEFLKIVSKKLNIPASRIYNEDGGEIDEIESIVAKEILY
ASCGEH---

---KGCDFXSSLTFKFKFXFKMSRFKFSGCESIKIGFRKY*fqndqfqxtnlskcnldna
llqeadlsganltgaslrgsnltganledcilkganfedrggqratlenvnfknasleea
nfsganlrvcnfksanlencnfrgadlaganledcnlrganlhkanligvnlkganfdir
tvssr*f*kkkni*fni*iqlqyiynikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
fffsshknk*knknknk*l*lkkkknnnnnrilk**nklikk*kkffk*MLSSMTDIRKR
VTVFQNGKRVGGKAISLPKKWSEFLKIVSKKLNIPASRIYNEDGGEIDEIESIVAKEILY
ASCGEH---

---gkdvisxll*lsssnsxlrcqglnlagvnlskldlgninfkmtnfxepifqnvi*im
psyrrliyqvqi*qvqv*evqi*qvqi*rivy*kvqtlkievvkeqpskm*tlkmlhskk
qtlvvqtlefvilkvqtwkivifvvli*lvqi*kivileeqtfikqi*lv*i*kvqisil
ellvqdnfkkkkiynstykynyniyiilkkk

Frame B:
fffphtkinkkikikinnyn*rkrriiiiiey*nnkinl*knkksflnkcypq*qileke
*qyfkmvkelgvkl*vyqrngqnf*rlyqrn*iyqpqesimkmveksmklnq*lqkryym
qvvvni---

---erm*fxfffnfqvqixv*dvkv*i*rv*iyqnwi*eilisk*pisxnqsfkm*sr*c
pptgg*sirckfnrckfkrfkfnrcksrglyikrckl*r*rwsksnprkckl*kcftrrs
kl*wckp*sl*f*kcklgkl*fswc*fswckfrrl*s*rskps*skfnwckfkrckfry*
nc*fkiilkkkkyiiqhintitiyi*y*kkk

Frame C:
fffltqk*ikk*k*k*iiiieekee*****nikiik*tykkikkvf*invilndry*kks
nsiskw*kswg*sykftkemvrifkdcikeikytslknl**rwwrnr*n*insckrdiic
klw*t---

---KGCDFXSSLTFKFKFXFKMSRFKFSGCESIKIGFRKY*fqndqfqxtnlskcnldna
llqeadlsganltgaslrgsnltganledcilkganfedrggqratlenvnfknasleea
nfsganlrvcnfksanlencnfrgadlaganledcnlrganlhkanligvnlkganfdir
tvssr*f*kkkni*fni*iqlqyiynikkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH138 (SSH138Q) /CSM/SS/SSH1-B/SSH138Q.Seq.d/                       1499   0.0
SLE602 (SLE602Q) /CSM/SL/SLE6-A/SLE602Q.Seq.d/                        997   0.0
SLA228 (SLA228Q) /CSM/SL/SLA2-B/SLA228Q.Seq.d/                        997   0.0
SLB312 (SLB312Q) /CSM/SL/SLB3-A/SLB312Q.Seq.d/                        995   0.0
VSG749 (VSG749Q) /CSM/VS/VSG7-C/VSG749Q.Seq.d/                        630   e-179
SSA432 (SSA432Q) /CSM/SS/SSA4-B/SSA432Q.Seq.d/                        466   e-130
VFO853 (VFO853Q) /CSM/VF/VFO8-C/VFO853Q.Seq.d/                         38   0.26
SFI826 (SFI826Q) /CSM/SF/SFI8-B/SFI826Q.Seq.d/                         38   0.26
SFF508 (SFF508Q) /CSM/SF/SFF5-A/SFF508Q.Seq.d/                         38   0.26
SFE593 (SFE593Q) /CSM/SF/SFE5-D/SFE593Q.Seq.d/                         38   0.26
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    34   5e-06  14
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    44   7e-04  12
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    40   7e-04  12
AF205581|AF205581.1 Plasmodium falciparum ribonucleotide reductase small subunit (R2) gene, promoter and partial cds.    40   9e-04  2
AC097964|AC097964.7 Rattus norvegicus clone CH230-118D6, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   0.003  2
AC132745|AC132745.3 Rattus norvegicus clone CH230-39C6, *** SEQUENCING IN PROGRESS ***, 64 unordered pieces.    36   0.003  2
AC125754|AC125754.5 Rattus norvegicus clone CH230-116F4, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   0.003  2
AC117956|AC117956.5 Rattus norvegicus clone CH230-363J1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36   0.003  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    30   0.004  17
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.004  20
dna update 2004. 2.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU302301_2(CU302301|pid:none) Zebrafish DNA sequence from clone ...   132   2e-35
BC076416_1(BC076416|pid:none) Danio rerio potassium channel tetr...   129   1e-34
BC126039_1(BC126039|pid:none) Xenopus laevis potassium channel t...   129   2e-34
AJ720563_1(AJ720563|pid:none) Gallus gallus mRNA for hypothetica...   124   5e-33
(Q7L273) RecName: Full=BTB/POZ domain-containing protein KCTD9; ...   120   5e-32
BC068518_1(BC068518|pid:none) Homo sapiens potassium channel tet...   120   5e-32
AB172166_1(AB172166|pid:none) Macaca fascicularis brain cDNA clo...   120   5e-32
AY069350_1(AY069350|pid:none) Drosophila melanogaster LD05823 fu...   130   9e-29
AE014297_80(AE014297|pid:none) Drosophila melanogaster chromosom...   130   9e-29
AB074499_1(AB074499|pid:none) Oryzias latipes FLJ20038, mdGnRH g...   127   5e-28
protein update 2009. 6.12
PSORT 

 psg: 0.69  gvh: 0.25  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SSH138 is nuc
5' end seq. ID SSH138F
5' end seq. 
>SSH138F.Seq
TTTTTTTTTTCCTCACACAAAAATAAATAAAAAAATAAAAATAAAAATAAATAATTATAA
TTGAAGAAAAAGAAGAATAATAATAATAATAGAATATTAAAATAATAAAATAAACTTATA
AAAAAATAAAAAAAGTTTTTTAAATAAATGTTATCCTCAATGACAGATATTAGAAAAAGA
GTAACAGTATTTCAAAATGGTAAAAGAGTTGGGGGTAAAGCTATAAGTTTACCAAAGAAA
TGGTCAGAATTTTTAAAGATTGTATCAAAGAAATTAAATATACCAGCCTCAAGAATCTAT
AATGAAGATGGTGGAGAAATCGATGAAATTGAATCAATAGTTGCAAAAGAGATATTATAT
GCAAGTTGTGGTGAACATT----------
Length of 5' end seq. 379
3' end seq. ID SSH138Z
3' end seq. 
>SSH138Z.Seq
----------GGAAAGGATGTGATTTCANTTCTTCTTTAACTTTCAAGTTCAAATTCANG
TTTAAGATGTCAAGGTTTAAATTTAGCGGGTGTGAATCTATCAAAATTGGATTTAGGAAA
TATTAATTTCAAAATGACCAATTTCAANGAACCAATCTTTCAAAATGTAATCTAGATAAT
GCCCTCCTACAGGAGGCTGATCTATCAGGTGCAAATTTAACAGGTGCAAGTTTAAGAGGT
TCAAATTTAACAGGTGCAAATCTAGAGGATTGTATATTAAAAGGTGCAAACTTTGAAGAT
AGAGGTGGTCAAAGAGCAACCCTCGAAAATGTAAACTTTAAAAATGCTTCACTCGAAGAA
GCAAACTTTAGTGGTGCAAACCTTAGAGTTTGTAATTTTAAAAGTGCAAACTTGGAAAAT
TGTAATTTTCGTGGTGCTGATTTAGCTGGTGCAAATTTAGAAGATTGTAATCTTAGAGGA
GCAAACCTTCATAAAGCAAATTTAATTGGTGTAAATTTAAAAGGTGCAAATTTCGATATT
AGAACTGTTAGTTCAAGATAATTTTAAAAAAAAAAAAATATATAATTCAACATATAAATA
CAATTACAATATATATATAATATTAAAAAAAAAAA
Length of 3' end seq. 625
Connected seq. ID SSH138P
Connected seq. 
>SSH138P.Seq
TTTTTTTTTTCCTCACACAAAAATAAATAAAAAAATAAAAATAAAAATAAATAATTATAA
TTGAAGAAAAAGAAGAATAATAATAATAATAGAATATTAAAATAATAAAATAAACTTATA
AAAAAATAAAAAAAGTTTTTTAAATAAATGTTATCCTCAATGACAGATATTAGAAAAAGA
GTAACAGTATTTCAAAATGGTAAAAGAGTTGGGGGTAAAGCTATAAGTTTACCAAAGAAA
TGGTCAGAATTTTTAAAGATTGTATCAAAGAAATTAAATATACCAGCCTCAAGAATCTAT
AATGAAGATGGTGGAGAAATCGATGAAATTGAATCAATAGTTGCAAAAGAGATATTATAT
GCAAGTTGTGGTGAACATT----------GGAAAGGATGTGATTTCANTTCTTCTTTAAC
TTTCAAGTTCAAATTCANGTTTAAGATGTCAAGGTTTAAATTTAGCGGGTGTGAATCTAT
CAAAATTGGATTTAGGAAATATTAATTTCAAAATGACCAATTTCAANGAACCAATCTTTC
AAAATGTAATCTAGATAATGCCCTCCTACAGGAGGCTGATCTATCAGGTGCAAATTTAAC
AGGTGCAAGTTTAAGAGGTTCAAATTTAACAGGTGCAAATCTAGAGGATTGTATATTAAA
AGGTGCAAACTTTGAAGATAGAGGTGGTCAAAGAGCAACCCTCGAAAATGTAAACTTTAA
AAATGCTTCACTCGAAGAAGCAAACTTTAGTGGTGCAAACCTTAGAGTTTGTAATTTTAA
AAGTGCAAACTTGGAAAATTGTAATTTTCGTGGTGCTGATTTAGCTGGTGCAAATTTAGA
AGATTGTAATCTTAGAGGAGCAAACCTTCATAAAGCAAATTTAATTGGTGTAAATTTAAA
AGGTGCAAATTTCGATATTAGAACTGTTAGTTCAAGATAATTTTAAAAAAAAAAAAATAT
ATAATTCAACATATAAATACAATTACAATATATATATAATATTAAAAAAAAAAA
Length of connected seq. 1004
Full length Seq ID -
Full length Seq. -
Length of full length seq. -