>SSH134 (SSH134Q) /CSM/SS/SSH1-B/SSH134Q.Seq.d/
XXXXXXXXXXAAATATAGTAAGGATACTTNGATATAACGGTTAACATTGATAAATCATTT
TTAGTTACCCATGACAAACAAAATTATCAAGCTTTCCCATGTTCAATTTTGGAAGATGTT
AAGGAACAAGCACAAAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGAC
GTTGTACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTA
GATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAA
TATATTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAA
CGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTT
TGCCGTGGTTGCTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACC
GCACGTCATTCTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAAT
CCTGATGATCATTTAAATAATGATTATTAATTATGAAGATCCTAATTATATTTGTACATT
ATAAATTATAATCAAAAAAAAAAAAAAAAAAATCCAGG

---i**GYXDITVNIDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQFFPDV
VQFSEDLANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKR
IVESDDIELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINP
DDHLNNDY*l*rs*lylyiinynqkkkkknp

Frame A:
---nivrilxyng*h**iifsyp*qtklssfpmfnfgrc*gtstkl*cnwy**rpifprr
cti**rlgksr*nryncrtrwylpkktipish*fsikg*iyykvncrlygllq*srlfkt
yrrk**yrinwwyr*iyfrlpwllq**sk*rk*yqtkqnrtsfsfskrtircstcckh*s
**sfk**llimkiliifvhykl*skkkkkksr


Frame B:
---i**GYXDITVNIDKSFLVTHDKQNYQAFPCSILEDVKEQAQNYDVIGIDEGQFFPDV
VQFSEDLANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKR
IVESDDIELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINP
DDHLNNDY*l*rs*lylyiinynqkkkkknp


Frame C:
---yskdtxi*rltlinhf*lpmtnkiiklshvqfwkmlrnkhktmm*lvlmkanfsqtl
ynlvktwqikvkpl*lph*mvpskenhsnqsli*yqrlnilqs*lpfvwfatmkppfqnv
sskvmisn*lvv*inifpfavvativikmkeivpnqakphvililkahhpllhll*tlil
mii*imiinyedpnyictl*iiikkkkkkiq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH134 (SSH134Q) /CSM/SS/SSH1-B/SSH134Q.Seq.d/                       1189   0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                       1126   0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                       1126   0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/                       1120   0.0
SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/                       1118   0.0
SSE604 (SSE604Q) /CSM/SS/SSE6-A/SSE604Q.Seq.d/                       1118   0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/                       1118   0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/                       1112   0.0
SSD279 (SSD279Q) /CSM/SS/SSD2-D/SSD279Q.Seq.d/                       1110   0.0
SSE242 (SSE242Q) /CSM/SS/SSE2-B/SSE242Q.Seq.d/                       1102   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.  1118   0.0    2
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.  1063   0.0    2
CB888459|CB888459.1 taa92g08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:KITH_CHICK P04047 THYMIDINE KINASE, CYTOSOLIC ;, mRNA sequence.    56   6e-04  1
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   8e-04  18
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    34   0.002  12
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.007  2
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    36   0.026  10
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence.    50   0.039  1
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence.    50   0.039  1
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   0.063  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom...   159   5e-38
(P04364) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   159   5e-38
(P68563) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   159   8e-38
AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi...   158   1e-37
(P04183) RecName: Full=Thymidine kinase, cytosolic;          EC=...   158   1e-37
AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t...   158   1e-37
AF163844_1(AF163844|pid:none) Cowpox virus thymidine kinase gene...   158   1e-37
BT030694_1(BT030694|pid:none) Bos taurus thymidine kinase 1, sol...   157   2e-37
AF163843_1(AF163843|pid:none) Ectromelia virus thymidine kinase ...   157   2e-37
K02031_1(K02031|pid:none) Variola major virus thymidine kinase g...   157   2e-37

 psg: 0.75  gvh: 0.25  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH134 is nuc

>SSH134Z.Seq
----------AAATATAGTAAGGATACTTNGATATAACGGTTAACATTGATAAATCATTT
TTAGTTACCCATGACAAACAAAATTATCAAGCTTTCCCATGTTCAATTTTGGAAGATGTT
AAGGAACAAGCACAAAACTATGATGTAATTGGTATTGATGAAGGCCAATTTTTCCCAGAC
GTTGTACAATTTAGTGAAGACTTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTA
GATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAA
TATATTACAAAGTTAACTGCCGTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAA
CGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTT
TGCCGTGGTTGCTACAATAGTGATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACC
GCACGTCATTCTCATTCTCAAAGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAAT
CCTGATGATCATTTAAATAATGATTATTAATTATGAAGATCCTAATTATATTTGTACATT
ATAAATTATAATCAAAAAAAAAAAAAAAAAAATCCAGG