>SSH128 (SSH128Q) /CSM/SS/SSH1-B/SSH128Q.Seq.d/
XXXXXXXXXXTCACCCCCAATTTCATGATATGGTTAGTAAATTTAACGGAATGGGCACGT
TGGACATCTTCAGAGATTTTGTCAAAAGAGAAATTGGTTGAAAGAGTTGTCACTTTATCA
TTCTTTATCGATTTAGCAAAGAGTTGTGTAGAGTTGGGTAACTATAATGCTGCCAATGCA
ATCGTTGGTGGTTTGAATCATTCTTCAATCTCTCGTTTGAAATTGACTTGGGAAAGATTA
TCAACAAAGGTCACCCAAGATTATGATCGTCTATTGTCATTATTCGATCTTTCAATGAAT
TATAAGAATTATCGTGACGAAATTAAATCTACCAAAGCAAAGATTATACCTTATCTTGGT
TTATTCCCAAAGGATTTAATTGCAATTGAAGAGGGTAATGATAATTTTACAAATAATAAT
CTAATTAATACTGAGAAATTCCGTTTACTTTATCAAACTATTAAAAAGATTCAATCTTAT
CAACAACCACTTTTCACTTTTAAAACTTCTGAACCAATTAAACAATATCTTAAAAATATT
TCAAATGGTTTATCAGAAGAAAAAGATTTCCATTCAATTAGTCATAAACTTGAACCAAGA
CAACAACAAACTCAATAAGAAAAAAAAAAA

---TPNFMIWLVNLTEWARWTSSEILSKEKLVERVVTLSFFIDLAKSCVELGNYNAANAI
VGGLNHSSISRLKLTWERLSTKVTQDYDRLLSLFDLSMNYKNYRDEIKSTKAKIIPYLGL
FPKDLIAIEEGNDNFTNNNLINTEKFRLLYQTIKKIQSYQQPLFTFKTSEPIKQYLKNIS
NGLSEEKDFHSISHKLEPRQQQTQ*ekkk

Frame A:
---hpqfhdmvskfngmgtldifrdfvkreig*kschfiilyrfskelcrvg*l*ccqcn
rwwfesffnlsfeidlgkiinkghprl*ssiviirsfnel*els*rn*iyqskdytlswf
ipkgfncn*rg***fyk**sn*y*eipftlsny*kdsilstttfhf*nf*tn*tis*kyf
kwfirrkrfpfn*s*t*tktttnsirkkk


Frame B:
---TPNFMIWLVNLTEWARWTSSEILSKEKLVERVVTLSFFIDLAKSCVELGNYNAANAI
VGGLNHSSISRLKLTWERLSTKVTQDYDRLLSLFDLSMNYKNYRDEIKSTKAKIIPYLGL
FPKDLIAIEEGNDNFTNNNLINTEKFRLLYQTIKKIQSYQQPLFTFKTSEPIKQYLKNIS
NGLSEEKDFHSISHKLEPRQQQTQ*ekkk


Frame C:
---ppis*yg**i*rnghvghlqrfcqkrnwlkelslyhslsi*qrvv*swvtimlpmqs
lvv*iilqslv*n*lgkdyqqrspkimivychysifq*iiriivtklnlpkqrlylilvy
sqri*lqlkrvmiilqiii*lilrnsvyfikllkrfnlinnhfsllkllnqlnnilkifq
mvyqkkkisiqlvinlnqdnnklnkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH128 (SSH128Q) /CSM/SS/SSH1-B/SSH128Q.Seq.d/                       1207   0.0
SLE645 (SLE645Q) /CSM/SL/SLE6-B/SLE645Q.Seq.d/                        888   0.0
VFO537 (VFO537Q) /CSM/VF/VFO5-B/VFO537Q.Seq.d/                         42   0.010
VFL665 (VFL665Q) /CSM/VF/VFL6-C/VFL665Q.Seq.d/                         42   0.010
VFL380 (VFL380Q) /CSM/VF/VFL3-D/VFL380Q.Seq.d/                         42   0.010
VFK667 (VFK667Q) /CSM/VF/VFK6-C/VFK667Q.Seq.d/                         42   0.010
VFI622 (VFI622Q) /CSM/VF/VFI6-A/VFI622Q.Seq.d/                         42   0.010
VFH705 (VFH705Q) /CSM/VF/VFH7-A/VFH705Q.Seq.d/                         42   0.010
VFD770 (VFD770Q) /CSM/VF/VFD7-C/VFD770Q.Seq.d/                         42   0.010
SSK306 (SSK306Q) /CSM/SS/SSK3-A/SSK306Q.Seq.d/                         42   0.010

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY160093|AY160093.1 Dictyostelium discoideum nucleotide exchange factor RasGEF D (gefD) gene, complete cds.  1132   0.0    2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.006  15
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    42   0.006  11
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    34   0.026  10
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence.    40   0.030  9
AC004051|AC004051.1 Homo sapiens chromosome 4 clone B208G5 map 4q25, complete sequence.    44   0.035  5
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    36   0.051  11
AR271570|AR271570.1 Sequence 2 from patent US 6503729.             36   0.057  5
L77118|L77118.1 Methanococcus jannaschii large extra-chromosomal element, complete sequence.    36   0.057  5
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    34   0.086  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY160093_1(AY160093|pid:none) Dictyostelium discoideum nucleotid...   353   3e-96
AC116986_28(AC116986|pid:none) Dictyostelium discoideum chromoso...   104   2e-21
AY160099_1(AY160099|pid:none) Dictyostelium discoideum nucleotid...   102   9e-21
AY160100_1(AY160100|pid:none) Dictyostelium discoideum nucleotid...   100   4e-20
AK122234_1(AK122234|pid:none) Mus musculus mRNA for mKIAA0277 pr...   100   4e-20
AF474377_1(AF474377|pid:none) Dictyostelium discoideum Ras GTP e...   100   4e-20
AK030016_1(AK030016|pid:none) Mus musculus adult male testis cDN...   100   4e-20
AK083591_1(AK083591|pid:none) Mus musculus 9 days embryo whole b...   100   4e-20
(P83900) RecName: Full=Rap guanine nucleotide exchange factor 5;...   100   6e-20
AY160098_1(AY160098|pid:none) Dictyostelium discoideum nucleotid...    99   1e-19

 psg: 0.91  gvh: 0.64  alm: 0.37  top: 0.47  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: extracellular, including cell wall
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: vacuolar

>> prediction for SSH128 is cyt

>SSH128Z.Seq
----------TCACCCCCAATTTCATGATATGGTTAGTAAATTTAACGGAATGGGCACGT
TGGACATCTTCAGAGATTTTGTCAAAAGAGAAATTGGTTGAAAGAGTTGTCACTTTATCA
TTCTTTATCGATTTAGCAAAGAGTTGTGTAGAGTTGGGTAACTATAATGCTGCCAATGCA
ATCGTTGGTGGTTTGAATCATTCTTCAATCTCTCGTTTGAAATTGACTTGGGAAAGATTA
TCAACAAAGGTCACCCAAGATTATGATCGTCTATTGTCATTATTCGATCTTTCAATGAAT
TATAAGAATTATCGTGACGAAATTAAATCTACCAAAGCAAAGATTATACCTTATCTTGGT
TTATTCCCAAAGGATTTAATTGCAATTGAAGAGGGTAATGATAATTTTACAAATAATAAT
CTAATTAATACTGAGAAATTCCGTTTACTTTATCAAACTATTAAAAAGATTCAATCTTAT
CAACAACCACTTTTCACTTTTAAAACTTCTGAACCAATTAAACAATATCTTAAAAATATT
TCAAATGGTTTATCAGAAGAAAAAGATTTCCATTCAATTAGTCATAAACTTGAACCAAGA
CAACAACAAACTCAATAAGAAAAAAAAAAA