>SSH126 (SSH126Q) /CSM/SS/SSH1-B/SSH126Q.Seq.d/
XXXXXXXXXXGTATCAATGCCCAATTGGATGCCCATGGTGGTGTTAAATTCACTAGAGAA
GGTGATTTCCAAACTTCATATTTAGATAAACTTAGCTTTGATATTAAAACCTCTGCTGAT
AGTAGTTCATTTGCAGTTTATTTTGGTGATGTTGCAACTAAAAACATTGACCCATTAGTA
GCCTCAACTTGGACCACTGTTGAATTGAGTGTTAAATCTTTAACAAATAATACAGTTGAA
GGTTCTATAACATTTTTCAATAATCAAGCTGATCCAATTAATATATGGTTAGATAATATT
AAATGGACATACACAGATGATGCTCCTCTTGATCAACCAACAATGGATTTAATTGAAGTA
AATAATAAACCATCAACAACATCAGGTACTGGAACCACTTCAAGTAAACCTTCATCTAGT
AGTGGTGGTGTTAGTGGTGGTGGTATTGGTAGTGAAAGTTCAATCTATGGATTAAGTTCT
GAAAACCAAGAAAATCAAAGTGGACATCATGCTTCTTCAAATACAAATATTTTATTACCA
ACTACTTTTGTTTTCTTTATTTCAATTACAATTTTATCATTACTTTTTTAAAATTATTAT
TATCATTATTATTATTCGAAAAATAAAAAAAAAAAAA

---INAQLDAHGGVKFTREGDFQTSYLDKLSFDIKTSADSSSFAVYFGDVATKNIDPLVA
STWTTVELSVKSLTNNTVEGSITFFNNQADPINIWLDNIKWTYTDDAPLDQPTMDLIEVN
NKPSTTSGTGTTSSKPSSSSGGVSGGGIGSESSIYGLSSENQENQSGHHASSNTNILLPT
TFVFFISITILSLLF*nyyyhyyysknkkkk

Frame A:
---yqcpigcpwwc*ih*rr*fpnfifr*t*l*y*nlc***ficslfw*ccn*kh*piss
lnldhc*iec*ifnk*ys*rfynifq*ss*sn*ymvr*y*mdihr*css*stnngfn*sk
**tinnirywnhfk*tfi**wwc*wwwyw**kfnlwikf*kprkskwtscffkykyfitn
yfcflyfnynfiitflklllslllfek*kkk


Frame B:
---INAQLDAHGGVKFTREGDFQTSYLDKLSFDIKTSADSSSFAVYFGDVATKNIDPLVA
STWTTVELSVKSLTNNTVEGSITFFNNQADPINIWLDNIKWTYTDDAPLDQPTMDLIEVN
NKPSTTSGTGTTSSKPSSSSGGVSGGGIGSESSIYGLSSENQENQSGHHASSNTNILLPT
TFVFFISITILSLLF*nyyyhyyysknkkkk


Frame C:
---smpnwmpmvvlnslekvisklhi*inlalilkpllivvhlqfilvmlqlktlth**p
qlgplln*vlnl*qiiqlkvl*hfsiikliqliyg*iilnghtqmmlllinqqwi*lk*i
inhqqhqvleplqvnlhlvvvvlvvvvlvvkvqsmd*vlktkkikvdimllqiqifyyql
llfslfqlqfyhyffkiiiiiiiirkikkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH126 (SSH126Q) /CSM/SS/SSH1-B/SSH126Q.Seq.d/                       1059   0.0
SSF684 (SSF684Q) /CSM/SS/SSF6-D/SSF684Q.Seq.d/                       1051   0.0
SLH350 (SLH350Q) /CSM/SL/SLH3-C/SLH350Q.Seq.d/                       1051   0.0
SLB724 (SLB724Q) /CSM/SL/SLB7-A/SLB724Q.Seq.d/                       1051   0.0
AFG601 (AFG601Q) /CSM/AF/AFG6-A/AFG601Q.Seq.d/                       1051   0.0
SSG547 (SSG547Q) /CSM/SS/SSG5-B/SSG547Q.Seq.d/                       1043   0.0
AFG506 (AFG506Q) /CSM/AF/AFG5-A/AFG506Q.Seq.d/                       1043   0.0
SSF421 (SSF421Q) /CSM/SS/SSF4-A/SSF421Q.Seq.d/                       1015   0.0
SLC172 (SLC172Q) /CSM/SL/SLC1-C/SLC172Q.Seq.d/                        985   0.0
AFC161 (AFC161Q) /CSM/AF/AFC1-C/AFC161Q.Seq.d/                        908   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115510|AC115510.4 Rattus norvegicus clone CH230-383C9, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    50   1e-07  2
AC095424|AC095424.4 Rattus norvegicus clone CH230-7A8, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    50   3e-07  2
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   2e-06  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    54   4e-06  14
AL133368|AL133368.6 Human chromosome 14 DNA sequence BAC R-436M15 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    60   4e-05  1
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    36   0.001  7
AC096066|AC096066.6 Rattus norvegicus clone CH230-20D23, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46   0.002  5
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    44   0.002  9
AC128133|AC128133.2 Rattus norvegicus clone CH230-396J24, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   0.004  3
BX649343|BX649343.2 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP6-214L17.    42   0.006  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE015927_2240(AE015927|pid:none) Clostridium tetani E88, complet...    35   1.8
CP001390_52(CP001390|pid:none) Geobacter sp. FRC-32, complete ge...    35   1.8
AL844504_205(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    34   4.0
AJ969073_14(AJ969073|pid:none) Spiroplasma citri pSci5 plasmid.        33   5.2
AE015450_134(AE015450|pid:none) Mycoplasma gallisepticum strain ...    33   6.8
CP000878_56(CP000878|pid:none) Prochlorococcus marinus str. MIT ...    33   6.8
AB257601_1(AB257601|pid:none) Paenibacillus sp. KSM-M35 gene for...    33   6.8
AE016830_1858(AE016830|pid:none) Enterococcus faecalis V583, com...    33   8.8
CP000568_617(CP000568|pid:none) Clostridium thermocellum ATCC 27...    33   8.8

 psg: 0.75  gvh: 0.40  alm: 0.27  top: 0.60  tms: 0.07  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSH126 is cyt

>SSH126Z.Seq
----------GTATCAATGCCCAATTGGATGCCCATGGTGGTGTTAAATTCACTAGAGAA
GGTGATTTCCAAACTTCATATTTAGATAAACTTAGCTTTGATATTAAAACCTCTGCTGAT
AGTAGTTCATTTGCAGTTTATTTTGGTGATGTTGCAACTAAAAACATTGACCCATTAGTA
GCCTCAACTTGGACCACTGTTGAATTGAGTGTTAAATCTTTAACAAATAATACAGTTGAA
GGTTCTATAACATTTTTCAATAATCAAGCTGATCCAATTAATATATGGTTAGATAATATT
AAATGGACATACACAGATGATGCTCCTCTTGATCAACCAACAATGGATTTAATTGAAGTA
AATAATAAACCATCAACAACATCAGGTACTGGAACCACTTCAAGTAAACCTTCATCTAGT
AGTGGTGGTGTTAGTGGTGGTGGTATTGGTAGTGAAAGTTCAATCTATGGATTAAGTTCT
GAAAACCAAGAAAATCAAAGTGGACATCATGCTTCTTCAAATACAAATATTTTATTACCA
ACTACTTTTGTTTTCTTTATTTCAATTACAATTTTATCATTACTTTTTTAAAATTATTAT
TATCATTATTATTATTCGAAAAATAAAAAAAAAAAAA