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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH109
Library SS
(Link to library)
Clone ID SSH109
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05306-1
Original site URL
Representative seq. ID SSH109E
(Link to Original site)
Representative DNA sequence 
>SSH109 (SSH109Q) /CSM/SS/SSH1-A/SSH109Q.Seq.d/
ATCAATTATTTAAAATAAAATTTAAAATGGATAGTTGTGATTATAAATCATATGCACAGG
CATTAGATTTAGTTAATGATAAAGAATTAATTGAAGAATATAAGAAATATCATAAAAATG
TTTGGAAAGAAGTAAATGAAGCATTATGCTCAATAGGAATTAAAAAAATGAAGATTTTTT
TACTTGGAACCCATCTTTTTATGTATTATGAAGCAAGAGCTGATTTTGATCCAAAAATTG
ATTTCCAAAAATATACAGAATTAACNCCAAAAGCAAATGAATGGGATAACTTAATGNGAA
AATTTCAACAAAAAATATCTGATATTCCAGAAAATCAATTAGGTGAATGGTGGAGTCCAA
TGGATTTAGTTTATGATTTGGATTGGTTTAAACAACAACAATAAAAAATTAAAAATAATT
AATTAAAAAAAGTAATAATAAAAATGATAATTAATATTTTTTTTTTTAAAAAAAAAAAAA
AAAAAAAAAAAAA
sequence update 1998. 4.29
Translated Amino Acid sequence 
QLFKIKFKMDSCDYKSYAQALDLVNDKELIEEYKKYHKNVWKEVNEALCSIGIKKMKIFL
LGTHLFMYYEARADFDPKIDFQKYTELTPKANEWDNLMXKFQQKISDIPENQLGEWWSPM
DLVYDLDWFKQQQ*kiknn*lkkviikmiinifffkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
inylk*nlkwivviinhmhrh*i*lmikn*lknirniikmfgkk*mkhyaq*elkk*rff
ylepiflcimkqeliliqkliskniqn*xqkqmngit*xenfnkkylifqkin*vnggvq
wi*fmiwiglnnnnkklkiin*kk***k**liffflkkkkkkkk


Frame B:
sii*nki*ng*l*l*iictgirfs***rin*ri*eis*kclersk*simlnrn*knedff
twnpsfyvl*sks*f*skn*fpkiyrinxksk*mg*lnxkistkni*ysrksir*mvesn
gfsl*fglv*tttikn*k*likksnnkndn*yfff*kkkkkkkk


Frame C:
QLFKIKFKMDSCDYKSYAQALDLVNDKELIEEYKKYHKNVWKEVNEALCSIGIKKMKIFL
LGTHLFMYYEARADFDPKIDFQKYTELTPKANEWDNLMXKFQQKISDIPENQLGEWWSPM
DLVYDLDWFKQQQ*kiknn*lkkviikmiinifffkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH109 (SSH109Q) /CSM/SS/SSH1-A/SSH109Q.Seq.d/                        696   0.0
VHP431 (VHP431Q) /CSM/VH/VHP4-B/VHP431Q.Seq.d/                         42   0.008
SSM146 (SSM146Q) /CSM/SS/SSM1-B/SSM146Q.Seq.d/                         42   0.008
AHQ146 (AHQ146Q) /CSM/AH/AHQ1-B/AHQ146Q.Seq.d/                         42   0.008
AHP228 (AHP228Q) /CSM/AH/AHP2-B/AHP228Q.Seq.d/                         42   0.008
AHB210 (AHB210Q) /CSM/AH/AHB2-A/AHB210Q.Seq.d/                         42   0.008
AFO669 (AFO669Q) /CSM/AF/AFO6-C/AFO669Q.Seq.d/                         42   0.008
AFM523 (AFM523Q) /CSM/AF/AFM5-A/AFM523Q.Seq.d/                         42   0.008
AFL118 (AFL118Q) /CSM/AF/AFL1-A/AFL118Q.Seq.d/                         42   0.008
AFI749 (AFI749Q) /CSM/AF/AFI7-C/AFI749Q.Seq.d/                         42   0.008
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   319  0.0  5
U50301|U50301.2 Caenorhabditis elegans cosmid F20D6, complete sequence.    38  8e-04  5
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    34  0.002  6
AC118215|AC118215.3 Mus musculus clone RP23-187C5, WORKING DRAFT SEQUENCE, 11 unordered pieces.    40  0.022  5
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    34  0.022  11
AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    30  0.040  9
AC087422|AC087422.1 Caenorhabditis briggsae cosmid CB033P12, complete sequence.    48  0.10  1
AL133319|AL133319.24 Human DNA sequence from clone RP11-394G3 on chromosome 6. Contains  STSs, ESTs and GSSs.    34  0.11  8
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    42  0.12  10
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                 32  0.13  8
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556R9) RecName: Full=UPF0734 protein DDB_G0273871/DDB_G0273177...   258   4e-68
CP001326_348(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   114   9e-25
CP001275_243(CP001275|pid:none) Thermomicrobium roseum DSM 5159,...    92   9e-18
CU207366_1680(CU207366|pid:none) Gramella forsetii KT0803 comple...    75   6e-13
CP000586_21(CP000586|pid:none) Ostreococcus lucimarinus CCE9901 ...    75   8e-13
AE015928_3664(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    75   1e-12
AE015928_1276(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    73   3e-12
CP000139_188(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ...    72   5e-12
CP001636_21(CP001636|pid:none) Variovorax paradoxus S110 chromos...    72   7e-12
CP000139_211(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ...    70   2e-11
protein update 2009. 7. 7
PSORT 

 psg: 0.60  gvh: 0.23  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSH109 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH109E
Full length Seq. 
>SSH109E.Seq
ATCAATTATTTAAAATAAAATTTAAAATGGATAGTTGTGATTATAAATCATATGCACAGG
CATTAGATTTAGTTAATGATAAAGAATTAATTGAAGAATATAAGAAATATCATAAAAATG
TTTGGAAAGAAGTAAATGAAGCATTATGCTCAATAGGAATTAAAAAAATGAAGATTTTTT
TACTTGGAACCCATCTTTTTATGTATTATGAAGCAAGAGCTGATTTTGATCCAAAAATTG
ATTTCCAAAAATATACAGAATTAACNCCAAAAGCAAATGAATGGGATAACTTAATGNGAA
AATTTCAACAAAAAATATCTGATATTCCAGAAAATCAATTAGGTGAATGGTGGAGTCCAA
TGGATTTAGTTTATGATTTGGATTGGTTTAAACAACAACAATAAAAAATTAAAAATAATT
AATTAAAAAAAGTAATAATAAAAATGATAATTAATATTTTTTTTTTTAAAAAAAAAAAAA
AAAAAAAAAAAAA
Length of full length seq. 493