>SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/
XXXXXXXXXXTTTAATGACAAATGCATTCGAATATATTATTAAAAATAATGGTTTAAATA
GCGAAGAACAATACCCATACGAAATGAAAGTTAACGATGAATGTAAATTCCAAGAGGGTA
GTGTTGCTGCCAAGATTACATCATATAAAGAAATTGAAGCAGGCGATGAAAACGATTTAC
AAAATGCTTTACTTTTAAATCCAGTCTCAGTTGCTATTGATGCTTCTCATAATAGTTTCC
AACTTTACACTGCCGGTGTTTACTATGAACCAGCTTGTTCTTCTGAAGATTTAGATCATG
GTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGAAGATTATTACATTGTTAAAAATA
GTTGGGGACCATCATGGGGTTTAAATGGTTATATTCATATGGCAAGAAATAAAGATAACA
ATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCTTAACCATTTTTATATGTATAGA
TATATATATATATAAATACTCTTCAAACCTGTATAAATTTGTATATTCTTTATCTTTTTT
TTCTTTTTTTTTTCTGTTTATTCTTTTTTAAAA

---LMTNAFEYIIKNNGLNSEEQYPYEMKVNDECKFQEGSVAAKITSYKEIEAGDENDLQ
NALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGEDYYIVKNS
WGPSWGLNGYIHMARNKDNNCGISTMASYPIA*pflyv*iyiyintlqtcinlyilylff
lfffclfffk

Frame A:
---LMTNAFEYIIKNNGLNSEEQYPYEMKVNDECKFQEGSVAAKITSYKEIEAGDENDLQ
NALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGEDYYIVKNS
WGPSWGLNGYIHMARNKDNNCGISTMASYPIA*pflyv*iyiyintlqtcinlyilylff
lfffclfffk


Frame B:
---**qmhsnillkimv*iaknnthtk*kltmnvnskrvvllprlhhikklkqamktiyk
mlyf*iqsqlllmlliivsnftlpvftmnqlvllki*imvylllvwvlimvkiitllkiv
gdhhgv*mvifiwqeikitivesqqwlhilllnhfymyryiyi*ilfkpv*iciffifff
fffsvysflk


Frame C:
---ndkciriyy*k*wfk*rrtipirnes*r*m*iprg*cccqdyii*rn*srr*krftk
cftfksslscy*cfs**fptlhcrcll*tslff*rfrswctccwygy**w*rllhc*k*l
gtimgfkwlysygkk*r*qlwnlnngfisycltificidiyiykyssnlykfvyslsffs
ffflfilf*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/                        908   0.0
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/                        908   0.0
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/                        908   0.0
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/                        908   0.0
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/                        900   0.0
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/                        844   0.0
SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/                        775   0.0
SSA169 (SSA169Q) /CSM/SS/SSA1-C/SSA169Q.Seq.d/                        726   0.0
SSJ288 (SSJ288Q) /CSM/SS/SSJ2-D/SSJ288Q.Seq.d/                        700   0.0
SSJ459 (SSJ459Q) /CSM/SS/SSJ4-C/SSJ459Q.Seq.d/                        690   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    54   4e-08  2
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    46   5e-07  3
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    46   1e-06  5
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.    58   1e-04  1
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.    58   1e-04  1
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           40   4e-04  17
AI067610|AI067610.1 EST209292 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCC16 5' end similar to cathepsin L, mRNA sequence.    34   0.001  3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.001  13
CB272018|CB272018.1 taa29f12.x2 Hydra EST -II Hydra magnipapillata cDNA 3' similar to TR:O96086 O96086 CATHEPSIN L-LIKE TICK CYSTEINE PROTEINASE B. ;, mRNA sequence.    44   0.002  2
AI975022|AI975022.1 EST269616 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAA90 5' end similar to cathepsin L, mRNA sequence.    34   0.002  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ...   196   4e-49
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   190   3e-47
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   190   3e-47
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   186   3e-46
BT080951_1(BT080951|pid:none) Caligus clemensi clone ccle-evs-50...   183   3e-45
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae...   182   5e-45
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys...   182   7e-45
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   179   4e-44
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   179   5e-44
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...   179   6e-44

 psg: 0.48  gvh: 0.31  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH103 is nuc

>SSH103Z.Seq
----------TTTAATGACAAATGCATTCGAATATATTATTAAAAATAATGGTTTAAATA
GCGAAGAACAATACCCATACGAAATGAAAGTTAACGATGAATGTAAATTCCAAGAGGGTA
GTGTTGCTGCCAAGATTACATCATATAAAGAAATTGAAGCAGGCGATGAAAACGATTTAC
AAAATGCTTTACTTTTAAATCCAGTCTCAGTTGCTATTGATGCTTCTCATAATAGTTTCC
AACTTTACACTGCCGGTGTTTACTATGAACCAGCTTGTTCTTCTGAAGATTTAGATCATG
GTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGAAGATTATTACATTGTTAAAAATA
GTTGGGGACCATCATGGGGTTTAAATGGTTATATTCATATGGCAAGAAATAAAGATAACA
ATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCTTAACCATTTTTATATGTATAGA
TATATATATATATAAATACTCTTCAAACCTGTATAAATTTGTATATTCTTTATCTTTTTT
TTCTTTTTTTTTTCTGTTTATTCTTTTTTAAAA