>SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/
TGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAA
GAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAA
GAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATT
AAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACA
TACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGC
TCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTG
GAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACA
TTAAAAAAAAAAAAAAAAAAAAATTTAGTTTTTGTATAAAAAAAAAACAA

vfkkfikikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQL
NSNFKNIKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAW
KFYEGKKYKENEQKLIKQKH*kkkkkki*flykkkt

Frame A:
cf*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeyciliclwnkcikrsi
kfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfpsfgciwficl
eil*rkeiqre*tkin*tktlkkkkkknlvfv*kkn


Frame B:
vfkkfikikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQL
NSNFKNIKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAW
KFYEGKKYKENEQKLIKQKH*kkkkkki*flykkkt


Frame C:
flknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple*mhqkin*
iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lwvylvyllg
nsmkerntkrmnkn*lnknikkkkkkkfsfcikkkq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/                        731   0.0
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/                        731   0.0
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/                        731   0.0
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/                        731   0.0
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/                        731   0.0
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/                        731   0.0
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/                        731   0.0
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/                        731   0.0
SSG837 (SSG837Q) /CSM/SS/SSG8-B/SSG837Q.Seq.d/                        731   0.0
SSF657 (SSF657Q) /CSM/SS/SSF6-C/SSF657Q.Seq.d/                        731   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    32   0.003  8
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             38   0.003  12
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     38   0.003  12
AL079351|AL079351.2 Human chromosome 4 DNA sequence *** IN PROGRESS *** BAC R-1035P1 of  RPCI-11 library from Homo sapiens (Human).    36   0.004  6
AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732401F15, 3' end partial sequence.    52   0.007  1
AF071814|AF071814.1 Streptococcus pneumoniae strain WU2 PspA (pspA) gene, partial cds.    52   0.007  1
AC132766|AC132766.3 Rattus norvegicus clone CH230-235I13, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    32   0.007  8
AC129092|AC129092.12 Medicago truncatula clone mth2-17n16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   0.009  6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.010  13
AC114374|AC114374.5 Rattus norvegicus clone CH230-87N16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36   0.019  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ...    37   0.17
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A...    35   0.63
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f...    35   0.63
AL844507_240(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.83
EF145887_1(EF145887|pid:none) Populus trichocarpa clone WS0114_A...    33   3.1
CP000768_40(CP000768|pid:none) Campylobacter jejuni subsp. doyle...    33   3.1
AC116305_7(AC116305|pid:none) Dictyostelium discoideum chromosom...    33   4.1
AM458473_6(AM458473|pid:none) Vitis vinifera contig VV78X094999....    33   4.1
AL844505_83(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    33   4.1
(Q14JW6) RecName: Full=Lipid A export ATP-binding/permease prote...    32   5.4

 psg: 0.58  gvh: 0.40  alm: 0.31  top: 0.47  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSG891 is mit

>SSG891E.Seq
TGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAA
GAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAA
GAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATT
AAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACA
TACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGC
TCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTG
GAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACA
TTAAAAAAAAAAAAAAAAAAAAATTTAGTTTTTGTATAAAAAAAAAACAA