SSG875
Library SS
(Link to library)
Clone ID SSG875
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16244-1
Original site URL
Representative seq. ID SSG875Z
(Link to Original site)
Representative DNA sequence
>SSG875 (SSG875Q) /CSM/SS/SSG8-D/SSG875Q.Seq.d/
XXXXXXXXXXAAAATGAACAATTACCTCTTGGGTGGTGATTACATTATCTCAATTCTAGG
TAACTCTGATGTTTCAAAATGCTACAAGCATGTCCCAGTAAACCAAGCTAACCAAGAACC
TGAAAGTATTGTATTACTTTCAACATCTTCTGAACAACTTGTTTTACAATCTGATGGTGA
AACAGTCGTTCAAAAAAAATATAGAGAATCAAAAATCTACTGCTTCAACACCACTAGTCA
ATGGAGTTTTAATTTTTTCAACAGTTCTTTTATTTTTACAATTAATAATCTAAAACGTTT
TAACAAAAACTCTCTTTTTTTTTAAAAAAAAAAATAAATAAAAAAAATGTTTTCAAATAT
ATTTGAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997.12. 9
Translated Amino Acid sequence
---MNNYLLGGDYIISILGNSDVSKCYKHVPVNQANQEPESIVLLSTSSEQLVLQSDGET
VVQKKYRESKIYCFNTTSQWSFNFFNSSFIFTINNLKRFNKNSLFF*kkk*ikkmfsnif
ekkktkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---k*titswvvitlsqf*vtlmfqnatsmsq*tkltknlkvlyyfqhllnnlfynlmvk
qsfkknienqkstastplvngvlifstvllflqlii*nvltktlfffkkknk*kkcfqiy
lkkkkqkkkkkkkkk


Frame B:
---neqlplgw*lhylnsr*l*cfkmlqacpskps*prt*kycitfnif*ttcfti*w*n
srskki*riknlllqhh*smef*ffqqffyfyn**sktf*qklsfflkkkinkknvfkyi
*kkknkkkkkkkkk


Frame C:
---MNNYLLGGDYIISILGNSDVSKCYKHVPVNQANQEPESIVLLSTSSEQLVLQSDGET
VVQKKYRESKIYCFNTTSQWSFNFFNSSFIFTINNLKRFNKNSLFF*kkk*ikkmfsnif
ekkktkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK871 (SSK871Q) /CSM/SS/SSK8-C/SSK871Q.Seq.d/ 555 e-157
SSK712 (SSK712Q) /CSM/SS/SSK7-A/SSK712Q.Seq.d/ 555 e-157
SSJ624 (SSJ624Q) /CSM/SS/SSJ6-A/SSJ624Q.Seq.d/ 555 e-157
SSG875 (SSG875Q) /CSM/SS/SSG8-D/SSG875Q.Seq.d/ 555 e-157
SSE582 (SSE582Q) /CSM/SS/SSE5-D/SSE582Q.Seq.d/ 555 e-157
SSK675 (SSK675Q) /CSM/SS/SSK6-D/SSK675Q.Seq.d/ 545 e-154
SSK461 (SSK461Q) /CSM/SS/SSK4-C/SSK461Q.Seq.d/ 545 e-154
SSK128 (SSK128Q) /CSM/SS/SSK1-B/SSK128Q.Seq.d/ 545 e-154
SSJ735 (SSJ735Q) /CSM/SS/SSJ7-B/SSJ735Q.Seq.d/ 545 e-154
SSI433 (SSI433Q) /CSM/SS/SSI4-B/SSI433Q.Seq.d/ 545 e-154

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL162496|AL162496.11 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-237E3. 44 0.33 2
AC009498|AC009498.4 Homo sapiens BAC clone RP11-507C18 from 2, complete sequence. 38 0.44 5
BX248585|BX248585.1 Blochmannia floridanus complete genome; segment 2/3. 36 0.53 6
AP003360|AP003360.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 3/9. 32 0.59 9
AX954530|AX954530.1 Sequence 1376 from Patent WO03093306. 34 0.71 8
L12388|L12388.1 Lupinus angustifolius nodulin-45 gene, complete cds. 42 0.74 2
AC069083|AC069083.3 Homo sapiens chromosome 3 clone CTD-2006H8 map 3, WORKING DRAFT SEQUENCE, 16 unordered pieces. 34 0.76 2
AC133478|AC133478.2 Homo sapiens 3 BAC RP11-472P6 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 34 0.77 2
AL596173|AL596173.1 Listeria innocua Clip11262 complete genome, segment 11/12. 38 0.88 6
AX345395|AX345395.1 Sequence 466 from Patent WO0200928. 36 1.1 3
dna update 2004. 2.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000749_902(CP000749|pid:none) Marinomonas sp. MWYL1, complete ... 34 1.8
AK065543_1(AK065543|pid:none) Oryza sativa Japonica Group cDNA c... 33 3.1
AY093107_1(AY093107|pid:none) Arabidopsis thaliana unknown prote... 33 4.0
CR382136_307(CR382136|pid:none) Debaryomyces hansenii strain CBS... 32 5.2
(B2X1Z4) RecName: Full=DNA-directed RNA polymerase subunit beta'... 32 5.2
CP000557_1445(CP000557|pid:none) Geobacillus thermodenitrificans... 32 5.2

protein update 2009. 1.31
PSORT

psg: 0.75 gvh: 0.56 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for SSG875 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG875Z
3' end seq.
>SSG875Z.Seq
----------AAAATGAACAATTACCTCTTGGGTGGTGATTACATTATCTCAATTCTAGG
TAACTCTGATGTTTCAAAATGCTACAAGCATGTCCCAGTAAACCAAGCTAACCAAGAACC
TGAAAGTATTGTATTACTTTCAACATCTTCTGAACAACTTGTTTTACAATCTGATGGTGA
AACAGTCGTTCAAAAAAAATATAGAGAATCAAAAATCTACTGCTTCAACACCACTAGTCA
ATGGAGTTTTAATTTTTTCAACAGTTCTTTTATTTTTACAATTAATAATCTAAAACGTTT
TAACAAAAACTCTCTTTTTTTTTAAAAAAAAAAATAAATAAAAAAAATGTTTTCAAATAT
ATTTGAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 397
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -