>SSG868 (SSG868Q) /CSM/SS/SSG8-C/SSG868Q.Seq.d/
TATTAAGATTAATCAAATAAAAAGATGTCATTAAAAATTTTAGTACCAATTAAACGTGTT
GTTGATTATGCAGTAAAGATTAGAGTAAAAGGTGATAAATCAGGTGTTGAAACAGCAAAT
GTAAAGATGAGTATGAACCCATTCGATGAGATTGCAGTTGAAGAAGCAATCAGAATTAAA
GAGAAAAATTTAGCAAAAGAGATCATTGCAGTTTCAATGGGACCAAAAACATCACAAGCA
ATTAGAACTGCAATTGCAATGGGTGCAGATAAAGGTATTCACGTTGAAACCACTGCTGAA
TTACAACCATTAAGTGTTGCAAAATTATTAAAAGAATTAGTTGATAAAGAGAAACCAAAT
TTAATCATTCTTGGTAAACAAGCAATTGATGATGATTGTAATCAAACTGCTCAAATGTTA
GCTGGTTTATTAAATTGGCCACAAGCAACATTTGCATCAAAGGTTGATATTAAAGATGAT
AGTGTACATGTTACTCGTGAAATTGATGGTGGTTTAGAAACACTTTCAATGAAATTACCA
GCTATAATTTCATGTGACCTTAGATTAAATGAACCAAGATATGCAAAATTACAAAATATT
ATGATTATGAAATCTAAAAAAGCAGAATTAAAAGTTGAAACACCAGAAAGCCTTAATGTC
GATACTAATTGCAATCTTAAAATTATTTCAGTTGAAGAACCACCAAAGAGATCAGGTGGT
GTAAAAGTTGAAAGCGTTGAAAATGTTGTTGAAGCACTTAAAAAGCATGCTTTAATTTAA
ATTTAAAATATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAA
TAATATTAGTAACATATAAA

y*d*SNKKMSLKILVPIKRVVDYAVKIRVKGDKSGVETANVKMSMNPFDEIAVEEAIRIK
EKNLAKEIIAVSMGPKTSQAIRTAIAMGADKGIHVETTAELQPLSVAKLLKELVDKEKPN
LIILGKQAIDDDCNQTAQMLAGLLNWPQATFASKVDIKDDSVHVTREIDGGLETLSMKLP
AIISCDLRLNEPRYAKLQNIMIMKSKKAELKVETPESLNVDTNCNLKIISVEEPPKRSGG
VKVESVENVVEALKKHALI*i*nik*nkik*nkik*nkik*y**hi

Frame A:
y*d*SNKKMSLKILVPIKRVVDYAVKIRVKGDKSGVETANVKMSMNPFDEIAVEEAIRIK
EKNLAKEIIAVSMGPKTSQAIRTAIAMGADKGIHVETTAELQPLSVAKLLKELVDKEKPN
LIILGKQAIDDDCNQTAQMLAGLLNWPQATFASKVDIKDDSVHVTREIDGGLETLSMKLP
AIISCDLRLNEPRYAKLQNIMIMKSKKAELKVETPESLNVDTNCNLKIISVEEPPKRSGG
VKVESVENVVEALKKHALI*i*nik*nkik*nkik*nkik*y**hi


Frame B:
ikinqikrch*kf*yqlnvllimq*rle*kvinqvlkqqm*r*v*thsmrlqlkkqselk
rki*qkrslqfqwdqkhhkqlelqlqwvqikvftlkpllnynh*vlqny*kn*likrnqi
*sflvnkqlmmivikllkc*lvy*ighkqhlhqrlilkmivymllvklmvv*khfq*nyq
l*fhvtld*mnqdmqnykil*l*nlkkqn*klkhqkalmsiliailklfqlknhqrdqvv
*klkalkmllkhlksml*fkfki*nkik*nkik*nkik*nnisni*


Frame C:
lrlik*kdviknfstn*tcc*lcskd*skr**irc*nskckdeyepir*dcs*rsnqn*r
ekfskrdhcsfngtknitsn*ncncngcr*rysr*nhc*ittikcckiikris**retkf
nhsw*tsn***l*sncsnvswfiklatsnicikg*y*r**ctcys*n*wwfrntfneits
ynfm*p*ik*tkickitkyydyei*ksriks*ntrkp*cry*lqs*nyfs*rttkeirwc
ks*kr*kcc*st*kacfnlnlkykik*nkik*nkik*nkiilvtyk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG868 (SSG868Q) /CSM/SS/SSG8-C/SSG868Q.Seq.d/                       1540   0.0
VSA829 (VSA829Q) /CSM/VS/VSA8-B/VSA829Q.Seq.d/                        870   0.0
SSK851 (SSK851Q) /CSM/SS/SSK8-C/SSK851Q.Seq.d/                        765   0.0
AHF227 (AHF227Q) /CSM/AH/AHF2-B/AHF227Q.Seq.d/                        115   1e-24
VHQ342 (VHQ342Q) /CSM/VH/VHQ3-B/VHQ342Q.Seq.d/                         38   0.22
VHQ124 (VHQ124Q) /CSM/VH/VHQ1-A/VHQ124Q.Seq.d/                         38   0.22
VHP441 (VHP441Q) /CSM/VH/VHP4-B/VHP441Q.Seq.d/                         38   0.22
VHO234 (VHO234Q) /CSM/VH/VHO2-B/VHO234Q.Seq.d/                         38   0.22
VHN137 (VHN137Q) /CSM/VH/VHN1-B/VHN137Q.Seq.d/                         38   0.22
VHN125 (VHN125Q) /CSM/VH/VHN1-B/VHN125Q.Seq.d/                         38   0.22

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB931815|CB931815.1 ri63e05.y1 Meloidogyne chitwoodi J2 pDNR LIB Meloidogyne chitwoodi cDNA 5' similar to SW:ETFB_HUMAN P38117 ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT ;, mRNA sequence.    92  1e-16  2
Z72992|Z72992.1 S.cerevisiae chromosome VII reading frame ORF YGR207c.    58  7e-14  2
Z49133|Z49133.1 S.cerevisiae DNA; chromosome VII right arm (17.6 kb).    58  9e-13  2
BG227771|BG227771.1 kq13b11.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F23C8.5 CE20714 ELECTRON TRANSFER FLAVOPROTEIN BETA ;, mRNA sequence.    50  4e-10  4
BI747096|BI747096.1 rm35h05.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:Q9TXI4 Q9TXI4 F23C8.5 PROTEIN. [1] ;, mRNA sequence.    76  8e-10  1
CF015640|CF015640.1 QBL7h06.xg QBL Zea mays cDNA clone QBL7h06, mRNA sequence.    64  3e-07  2
AI820159|AI820159.1 605086F10.x3 605 - Endosperm cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence.    64  4e-07  2
AI812194|AI812194.1 605086F10.y1 605 - Endosperm cDNA library from Schmidt lab Zea mays cDNA, mRNA sequence.    64  4e-07  2
CD952519|CD952519.1 SBC_49 GeneTag2 Zea mays cDNA, mRNA sequence.    64  3e-06  1
AK063110|AK063110.1 Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D06, full insert sequence.    64  3e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ4) RecName: Full=Electron transfer flavoprotein subunit be...   467   e-130
CP001635_3328(CP001635|pid:none) Variovorax paradoxus S110 chrom...   306   6e-82
CP000316_3090(CP000316|pid:none) Polaromonas sp. JS666, complete...   305   1e-81
BX640451_185(BX640451|pid:none) Bordetella bronchiseptica strain...   305   2e-81
CP001392_2956(CP001392|pid:none) Diaphorobacter sp. TPSY, comple...   305   2e-81
CP000512_4229(CP000512|pid:none) Acidovorax citrulli AAC00-1, co...   305   2e-81
CP000512_2128(CP000512|pid:none) Acidovorax citrulli AAC00-1, co...   304   2e-81
BX640413_275(BX640413|pid:none) Bordetella pertussis strain Toha...   304   2e-81
BX640432_194(BX640432|pid:none) Bordetella parapertussis strain ...   304   2e-81
CP000529_1211(CP000529|pid:none) Polaromonas naphthalenivorans C...   303   6e-81

 psg: 0.68  gvh: 0.23  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for SSG868 is nuc

>SSG868F.Seq
TATTAAGATTAATCAAATAAAAAGATGTCATTAAAAATTTTAGTACCAATTAAACGTGTT
GTTGATTATGCAGTAAAGATTAGAGTAAAAGGTGATAAATCAGGTGTTGAAACAGCAAAT
GTAAAGATGAGTATGAACCCATTCGATGAGATTGCAGTTGAAGAAGCAATCAGAATTAAA
GAGAAAAATTTAGCAAAAGAGATCATTGCAGTTTCAATGGGACCAAAAACATCACAAGAA
ACAATTAGAACTGCAATTGCAATGGGTGCAGATAAAGGTATTCACGTTGAAACCACTGCT
GAATTACAACCATTAAGTGTTGCAAAATTATTAAAAGAATTAGTTGATAAAGAGAAACCA
AATTTAATCATTCTTGGTAAACAAGCAATTGATGATGATTGTAATCAAACTGCTCAAATG
TTAGCTGGTTTATTAAATTGGCCACAAGCAACATTTGCATCAAAGGTTGATATTAAAGAT
GATAGTGTACATGTTACTCGTGAAATTGATGGTGGTTTAGAAACACTTTCAATGAAATTA
CCAGCTATAATTTCATGTGACCTTAGATTAAATGAACCAAGATATGCAAAATTACAAAAT
ATTATGA----------

>SSG868Z.Seq
----------CAATTAGAACTGCAATTGCAATGGGTGCAGATAAAGGTATTCACGTTGAA
ACCACTGCTGAATTACAACCATTAAGTGTTGCAAAATTATTAAAAGAATTAGTTGATAAA
GAGAAACCAAATTTAATCATTCTTGGTAAACAAGCAATTGATGATGATTGTAATCAAACT
GCTCAAATGTTAGCTGGTTTATTAAATTGGCCACAAGCNACATTTGCATCAAAGGTTGAT
ATTAAAGATGATAGTGTACATGTTACTCGTGAAATTGATGGTGGTTTAGAAACACTTTCA
ATGAAATTACCAGCTATAATTTCATGTGACCTTAGATTAAATGAACCAAGATATGCAAAA
TTACAAAATATTATGAAATCTAAAAAAGCAGAATTAAAAGTTGAAACACCAGAAAGCCTT
AATGTCGATACTAATTGCAATCTTAAAATTATTTCAGTTGAAGAACCACCAAAGAGATCA
GGTGGTGTAAAAGTTGAAAGCGTTGAAAATGTTGTTGAAGCACTTAAAAAGCATGCTTTA
ATTTAAATTTAAAATATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAA
ATAAAATAATATTAGTAACATATAAAAAAAAAAAAA

>SSG868P.Seq
TATTAAGATTAATCAAATAAAAAGATGTCATTAAAAATTTTAGTACCAATTAAACGTGTT
GTTGATTATGCAGTAAAGATTAGAGTAAAAGGTGATAAATCAGGTGTTGAAACAGCAAAT
GTAAAGATGAGTATGAACCCATTCGATGAGATTGCAGTTGAAGAAGCAATCAGAATTAAA
GAGAAAAATTTAGCAAAAGAGATCATTGCAGTTTCAATGGGACCAAAAACATCACAAGAA
ACAATTAGAACTGCAATTGCAATGGGTGCAGATAAAGGTATTCACGTTGAAACCACTGCT
GAATTACAACCATTAAGTGTTGCAAAATTATTAAAAGAATTAGTTGATAAAGAGAAACCA
AATTTAATCATTCTTGGTAAACAAGCAATTGATGATGATTGTAATCAAACTGCTCAAATG
TTAGCTGGTTTATTAAATTGGCCACAAGCAACATTTGCATCAAAGGTTGATATTAAAGAT
GATAGTGTACATGTTACTCGTGAAATTGATGGTGGTTTAGAAACACTTTCAATGAAATTA
CCAGCTATAATTTCATGTGACCTTAGATTAAATGAACCAAGATATGCAAAATTACAAAAT
ATTATGA----------CAATTAGAACTGCAATTGCAATGGGTGCAGATAAAGGTATTCA
CGTTGAAACCACTGCTGAATTACAACCATTAAGTGTTGCAAAATTATTAAAAGAATTAGT
TGATAAAGAGAAACCAAATTTAATCATTCTTGGTAAACAAGCAATTGATGATGATTGTAA
TCAAACTGCTCAAATGTTAGCTGGTTTATTAAATTGGCCACAAGCNACATTTGCATCAAA
GGTTGATATTAAAGATGATAGTGTACATGTTACTCGTGAAATTGATGGTGGTTTAGAAAC
ACTTTCAATGAAATTACCAGCTATAATTTCATGTGACCTTAGATTAAATGAACCAAGATA
TGCAAAATTACAAAATATTATGAAATCTAAAAAAGCAGAATTAAAAGTTGAAACACCAGA
AAGCCTTAATGTCGATACTAATTGCAATCTTAAAATTATTTCAGTTGAAGAACCACCAAA
GAGATCAGGTGGTGTAAAAGTTGAAAGCGTTGAAAATGTTGTTGAAGCACTTAAAAAGCA
TGCTTTAATTTAAATTTAAAATATAAAATAAAATAAAATAAAATAAAATAAAATAAAATA
AAATAAAATAAAATAATATTAGTAACATATAAAAAAAAAAAAA

>SSG868E.Seq
TATTAAGATTAATCAAATAAAAAGATGTCATTAAAAATTTTAGTACCAATTAAACGTGTT
GTTGATTATGCAGTAAAGATTAGAGTAAAAGGTGATAAATCAGGTGTTGAAACAGCAAAT
GTAAAGATGAGTATGAACCCATTCGATGAGATTGCAGTTGAAGAAGCAATCAGAATTAAA
GAGAAAAATTTAGCAAAAGAGATCATTGCAGTTTCAATGGGACCAAAAACATCACAAGCA
ATTAGAACTGCAATTGCAATGGGTGCAGATAAAGGTATTCACGTTGAAACCACTGCTGAA
TTACAACCATTAAGTGTTGCAAAATTATTAAAAGAATTAGTTGATAAAGAGAAACCAAAT
TTAATCATTCTTGGTAAACAAGCAATTGATGATGATTGTAATCAAACTGCTCAAATGTTA
GCTGGTTTATTAAATTGGCCACAAGCAACATTTGCATCAAAGGTTGATATTAAAGATGAT
AGTGTACATGTTACTCGTGAAATTGATGGTGGTTTAGAAACACTTTCAATGAAATTACCA
GCTATAATTTCATGTGACCTTAGATTAAATGAACCAAGATATGCAAAATTACAAAATATT
ATGATTATGAAATCTAAAAAAGCAGAATTAAAAGTTGAAACACCAGAAAGCCTTAATGTC
GATACTAATTGCAATCTTAAAATTATTTCAGTTGAAGAACCACCAAAGAGATCAGGTGGT
GTAAAAGTTGAAAGCGTTGAAAATGTTGTTGAAGCACTTAAAAAGCATGCTTTAATTTAA
ATTTAAAATATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAA
TAATATTAGTAACATATAAA