SSG860
Library SS
(Link to library)
Clone ID SSG860
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSG860E
(Link to Original site)
Representative DNA sequence
>SSG860 (SSG860Q) /CSM/SS/SSG8-C/SSG860Q.Seq.d/
CAATTATAAACAACAAATTAAAAACTCAATTAAAAAATGAAATTATTATTTGTTTTATTA
TCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAA
ACCAATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAATTAAAAAA
GCCAGAGATATTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAGA
AAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCACA
TTTTTTTCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTT
GATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAACTA
ACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTA
ATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTATAAAA
A
sequence update 1997.12. 9
Translated Amino Acid sequence
ql*ttn*kln*KMKLLFVLLSLLLIFSVLVQSETAYFGLKTNGDHNDFIFKLTDSEKIKK
ARDILSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDASTIYVEDHL
DEACGAFLPGCFWCPWSSKLTREIKI*tirvklnys*lnliklnt*ifnnkvy*tkvfik


Translated Amino Acid sequence (All Frames)
Frame A:
ql*ttn*kln*KMKLLFVLLSLLLIFSVLVQSETAYFGLKTNGDHNDFIFKLTDSEKIKK
ARDILSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDASTIYVEDHL
DEACGAFLPGCFWCPWSSKLTREIKI*tirvklnys*lnliklnt*ifnnkvy*tkvfik


Frame B:
nykqqiknsikk*nyylfyylff*yfqywynlkqpilv*kpmvtimilfsn*qiqkklkk
peifclerkpmkfm*wvelerdlkaiiqsiplfltqiqshffpwllkfvmlqlfm*kitl
mrpvvlssqvasgahglqn*qeklkfkl*e*n*ithd*i*sn*ilkyliikfikqkfl*k


Frame C:
iinnklktqlkneiiicfiissfnifsigti*nslfwfknqw*p**fyfqinrfrkn*ks
qryfvwkgnq*sscng*n*ket*kl*skvflys*prynhiffhgy*sl*cfnylcrrsp*
*glwcfpprlllvpmvfktnkrn*nlnykskikllmikfnqikylni***sllnksfyk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM239 (SSM239Q) /CSM/SS/SSM2-B/SSM239Q.Seq.d/ 531 e-150
SSK842 (SSK842Q) /CSM/SS/SSK8-B/SSK842Q.Seq.d/ 531 e-150
SSK637 (SSK637Q) /CSM/SS/SSK6-B/SSK637Q.Seq.d/ 531 e-150
SSK558 (SSK558Q) /CSM/SS/SSK5-C/SSK558Q.Seq.d/ 531 e-150
SSJ755 (SSJ755Q) /CSM/SS/SSJ7-C/SSJ755Q.Seq.d/ 531 e-150
SSI859 (SSI859Q) /CSM/SS/SSI8-C/SSI859Q.Seq.d/ 531 e-150
SSI820 (SSI820Q) /CSM/SS/SSI8-A/SSI820Q.Seq.d/ 531 e-150
SSI577 (SSI577Q) /CSM/SS/SSI5-D/SSI577Q.Seq.d/ 531 e-150
SSH825 (SSH825Q) /CSM/SS/SSH8-B/SSH825Q.Seq.d/ 531 e-150
SSH326 (SSH326Q) /CSM/SS/SSH3-B/SSH326Q.Seq.d/ 531 e-150

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds. 305 0.0 4
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 109 9e-81 8
AL033510|AL033510.1 Caenorhabditis elegans YAC Y40H7A. 46 0.20 3
AC125803|AC125803.4 Rattus norvegicus clone CH230-8M13, WORKING DRAFT SEQUENCE, 1 ordered piece. 46 0.45 1
AC135477|AC135477.2 Rattus norvegicus clone CH230-464B15, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces. 38 1.6 2
AQ411929|AQ411929.1 CpG0915A CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence. 44 1.8 1
AC096079|AC096079.6 Rattus norvegicus clone CH230-33I23, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 44 1.8 1
AL928826|AL928826.9 Mouse DNA sequence from clone RP23-456N9 on chromosome 2. 34 2.4 4
AC138206|AC138206.4 Mus musculus chromosome 3 clone RP23-277G4 map 3, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 34 2.4 4
AC024181|AC024181.4 Homo sapiens chromosome 3 clone RP11-180K7, WORKING DRAFT SEQUENCE, 28 unordered pieces. 40 3.6 2
dna update 2003. 9. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ... 232 4e-60
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 141 9e-33
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 130 3e-29
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom... 46 5e-04
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 43 0.005
CP001184_633(CP001184|pid:none) Ureaplasma urealyticum serovar 1... 33 3.6
FN357305_20(FN357305|pid:none) Schistosoma mansoni genome sequen... 33 4.8
AP006716_1892(AP006716|pid:none) Staphylococcus haemolyticus JCS... 33 4.8
(Q4L574) RecName: Full=Phosphoribosylaminoimidazole carboxylase ... 33 4.8

protein update 2009. 7. 7
PSORT

psg: 0.98 gvh: 0.82 alm: 0.41 top: 0.23 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
12.0 %: vacuolar
8.0 %: cytoplasmic
8.0 %: endoplasmic reticulum
4.0 %: mitochondrial
4.0 %: nuclear

>> prediction for SSG860 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSG860E
Full length Seq.
>SSG860E.Seq
CAATTATAAACAACAAATTAAAAACTCAATTAAAAAATGAAATTATTATTTGTTTTATTA
TCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAA
ACCAATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAATTAAAAAA
GCCAGAGATATTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAGA
AAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCACA
TTTTTTTCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTT
GATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAACTA
ACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTA
ATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTATAAAA
A
Length of full length seq. 541