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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG830
Library SS
(Link to library)
Clone ID SSG830
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15575-1
Original site URL
Representative seq. ID SSG830E
(Link to Original site)
Representative DNA sequence 
>SSG830 (SSG830Q) /CSM/SS/SSG8-B/SSG830Q.Seq.d/
GTTAAATTTATAAAATGTTAAAACAACAACAACAACAACAATTACAACAACAATATCAAC
AACATTTACAACAATTACAACAACAACAACAACAATAATAATAATAATAATAATAATAAT
AATAANAATAATAATAATAATTNATAATAATAATAATAATAATAATAATAACATCAACAA
TGATAATANTGCAAGTTGGTACACCAAGTGGTAGTAGCAATAATGCACATACAAGTAGTA
GTAGTAATAGTAATGGCAGCAGTGGCAGTAGCGGCAGTAGTAGTAGTGTAAATAGCGTAG
TAAAAATGTCAAATGGCAACAGTGTAAATAGTAGCAGTAGCAATAGTAATTATAAACCTC
TTATTGAAAATACCCCCACCAAAGGTGTTTGGATAGTTGAAATACCTACATTTTCAGCTT
ATAAAGAAAGTTTCTATACTCCAATATTTAATTTATGTGAATCAAATTGGAGATTATTAA
TATTCCCAGAGGGAAATAATAGTCCTGGTAATATATCAATATTTTTGGATTATTATGATA
TCGGAACAAATCCAATGTTTCAAAAAGAGGCCACTCTCACATTAACTTTAATAAATCAAT
TTGATGAGTCAAAGAATGTAAAGAAAA
sequence update 1999. 4. 9
Translated Amino Acid sequence 
*iykmlkqqqqqqlqqqyqqhlqqlqqqqqq**********x****XIIIIIIIIITSTM
IIXQVGTPSGSSNNAHTSSSSNSNGSSGSSGSSSSVNSVVKMSNGNSVNSSSSNSNYKPL
IENTPTKGVWIVEIPTFSAYKESFYTPIFNLCESNWRLLIFPEGNNSPGNISIFLDYYDI
GTNPMFQKEATLTLTLINQFDESKNVKK
Translated Amino Acid sequence (All Frames) 
Frame A:
vkfikc*nnnnnnnynnninniynnynnnnnnnnnnnnnnnxnnnnnx*********hqq
**xcklvhqvvvaimhiqvvvvivmaavavaavvvv*ia**kcqmatv*ivavaiviinl
llkipppkvfg*lkylhfqlikkvsilqyliyvnqigdy*ysqreiivlviyqyfwiimi
seqiqcfkkrplsh*l**inlmsqrm*rk


Frame B:
lnl*nvkttttttitttisttfttittttttiiiiiiiiiixiiiiixnnnnnnnnninn
dnxaswytkw**q*ctyk******wqqwq*rq***ck*rsknvkwqqck**q*q**l*ts
y*kyphqrclds*ntyifsl*rkflysni*fm*ikleiiniprgk**sw*yinifgll*y
rnksnvskrghshinfnksi**vkecke


Frame C:
*iykmlkqqqqqqlqqqyqqhlqqlqqqqqq**********x****XIIIIIIIIITSTM
IIXQVGTPSGSSNNAHTSSSSNSNGSSGSSGSSSSVNSVVKMSNGNSVNSSSSNSNYKPL
IENTPTKGVWIVEIPTFSAYKESFYTPIFNLCESNWRLLIFPEGNNSPGNISIFLDYYDI
GTNPMFQKEATLTLTLINQFDESKNVKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG830 (SSG830Q) /CSM/SS/SSG8-B/SSG830Q.Seq.d/                        674   0.0
VHE830 (VHE830Q) /CSM/VH/VHE8-B/VHE830Q.Seq.d/                         36   0.62
VHC704 (VHC704Q) /CSM/VH/VHC7-A/VHC704Q.Seq.d/                         36   0.62
VHC652 (VHC652Q) /CSM/VH/VHC6-C/VHC652Q.Seq.d/                         36   0.62
SLH511 (SLH511Q) /CSM/SL/SLH5-A/SLH511Q.Seq.d/                         36   0.62
CHQ416 (CHQ416Q) /CSM/CH/CHQ4-A/CHQ416Q.Seq.d/                         36   0.62
CHE782 (CHE782Q) /CSM/CH/CHE7-D/CHE782Q.Seq.d/                         36   0.62
AHQ581 (AHQ581Q) /CSM/AH/AHQ5-D/AHQ581Q.Seq.d/                         36   0.62
AHH660 (AHH660Q) /CSM/AH/AHH6-C/AHH660Q.Seq.d/                         36   0.62
VHE890 (VHE890Q) /CSM/VH/VHE8-D/VHE890Q.Seq.d/                         34   2.4
own update 2003.10.30
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   363  0.0  5
AX583862|AX583862.1 Sequence 239 from Patent WO02059148.          42  0.23  2
AC121807|AC121807.3 Mus musculus chromosome 16 clone RP23-448N11, complete sequence.    44  2.1  1
AC127755|AC127755.3 Rattus norvegicus clone CH230-167I7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  2.1  1
AC115348|AC115348.4 Rattus norvegicus clone CH230-209P22, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  2.1  1
AC114654|AC114654.4 Mus musculus clone RP24-160I18, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  2.1  1
AE016751|AE016751.1 Staphylococcus epidermidis ATCC 12228, section 8 of 9 of the complete genome.    42  4.1  4
BX470190|BX470190.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-237N17.    44  4.2  2
AC023956|AC023956.2 Homo sapiens chromosome 2 clone RP11-339O18 map 2, WORKING DRAFT SEQUENCE, 47 unordered pieces.    42  4.9  2
BX550175|BX550175.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse111c12_q1c.    36  5.0  2
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_103(AC116957|pid:none) Dictyostelium discoideum chromos...   195   1e-48
AC116305_54(AC116305|pid:none) Dictyostelium discoideum chromoso...    69   1e-10
(Q8T126) RecName: Full=Probable inactive serine/threonine-protei...    68   2e-10
AP008207_2653(AP008207|pid:none) Oryza sativa (japonica cultivar...    47   4e-04
AF302663_1(AF302663|pid:none) Arabidopsis thaliana ubiquitin-spe...    45   0.002
AF360198_1(AF360198|pid:none) Arabidopsis thaliana putative ubiq...    45   0.002
(Q9FPT1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 12;...    45   0.002
AP002543_13(AP002543|pid:none) Arabidopsis thaliana genomic DNA,...    45   0.002
(Q9UTT1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 21;...    43   0.006
AC016795_20(AC016795|pid:none) Arabidopsis thaliana chromosome I...    42   0.019
protein update 2009. 7. 7
PSORT 

 psg: 1.01  gvh: 0.52  alm: 0.19  top: 0.50  tms: 0.07  mit: 0.48  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  8.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: extracellular, including cell wall

>> prediction for SSG830 is mit
5' end seq. ID SSG830F
5' end seq. 
>SSG830F.Seq
GTTAAATTTATAAAATGTTAAAACAACAACAACAACAACAATTACAACAACAATATCAAC
AACATTTACAACAATTACAACAACAACAACAACAATAATAATAATAATAATAATAATAAT
AATAANAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACATCAAC
AATGATAATATTGCA----------
Length of 5' end seq. 195
3' end seq. ID SSG830Z
3' end seq. 
>SSG830Z.Seq
----------TGATAATAATAATAATAATAATAATAATAACATCAACAATGATAATAGTG
CAGTTGGTACACCAAGTGGTAGTAGCAATAATGCACATACAAGTAGTAGTAGTAATAGTA
ATGGCAGCAGTGGCAGTAGCGGCAGTAGTAGTAGTGTAAATAGCGTAGTAAAAATGTCAA
ATGGCAACAGTGTAAATAGTAGCAGTAGCAATAGTAATTATAAACCTCTTATTGAAAATA
CCCCCACCAAAGGTGTTTGGATAGTTGAAATACCTACATTTTCAGCTTATAAAGAAAGTT
TCTATACTCCAATATTTAATTTATGTGAATCAAATTGGAGATTATTAATATTCCCAGAGG
GAAATAATAGTCCTGGTAATATATCAATATTTTTGGATTATTATGATATCGGAACAAATC
CAATGTTTCAAAAAGAGGCCACTCTCACATTAACTTTAATAAATCAATTTGATGAGTCAA
AGAATGTAAAGAAAATAATAAAA
Length of 3' end seq. 493
Connected seq. ID SSG830P
Connected seq. 
>SSG830P.Seq
GTTAAATTTATAAAATGTTAAAACAACAACAACAACAACAATTACAACAACAATATCAAC
AACATTTACAACAATTACAACAACAACAACAACAATAATAATAATAATAATAATAATAAT
AATAANAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACATCAAC
AATGATAATATTGCA----------TGATAATAATAATAATAATAATAATAATAACATCA
ACAATGATAATAGTGCAGTTGGTACACCAAGTGGTAGTAGCAATAATGCACATACAAGTA
GTAGTAGTAATAGTAATGGCAGCAGTGGCAGTAGCGGCAGTAGTAGTAGTGTAAATAGCG
TAGTAAAAATGTCAAATGGCAACAGTGTAAATAGTAGCAGTAGCAATAGTAATTATAAAC
CTCTTATTGAAAATACCCCCACCAAAGGTGTTTGGATAGTTGAAATACCTACATTTTCAG
CTTATAAAGAAAGTTTCTATACTCCAATATTTAATTTATGTGAATCAAATTGGAGATTAT
TAATATTCCCAGAGGGAAATAATAGTCCTGGTAATATATCAATATTTTTGGATTATTATG
ATATCGGAACAAATCCAATGTTTCAAAAAGAGGCCACTCTCACATTAACTTTAATAAATC
AATTTGATGAGTCAAAGAATGTAAAGAAAATAATAAAA
Length of connected seq. 688
Full length Seq ID SSG830E
Full length Seq. 
>SSG830E.Seq
GTTAAATTTATAAAATGTTAAAACAACAACAACAACAACAATTACAACAACAATATCAAC
AACATTTACAACAATTACAACAACAACAACAACAATAATAATAATAATAATAATAATAAT
AATAANAATAATAATAATAATTNATAATAATAATAATAATAATAATAATAACATCAACAA
TGATAATANTGCAAGTTGGTACACCAAGTGGTAGTAGCAATAATGCACATACAAGTAGTA
GTAGTAATAGTAATGGCAGCAGTGGCAGTAGCGGCAGTAGTAGTAGTGTAAATAGCGTAG
TAAAAATGTCAAATGGCAACAGTGTAAATAGTAGCAGTAGCAATAGTAATTATAAACCTC
TTATTGAAAATACCCCCACCAAAGGTGTTTGGATAGTTGAAATACCTACATTTTCAGCTT
ATAAAGAAAGTTTCTATACTCCAATATTTAATTTATGTGAATCAAATTGGAGATTATTAA
TATTCCCAGAGGGAAATAATAGTCCTGGTAATATATCAATATTTTTGGATTATTATGATA
TCGGAACAAATCCAATGTTTCAAAAAGAGGCCACTCTCACATTAACTTTAATAAATCAAT
TTGATGAGTCAAAGAATGTAAAGAAAA
Length of full length seq. 627