>SSG806 (SSG806Q) /CSM/SS/SSG8-A/SSG806Q.Seq.d/
XXXXXXXXXXAAAAAAATGTTAAACAGAAATCAAAAATATGATTTACACACTATTATTTT
AAATAGTAAAAGTTTAAGAAAGCATCATATCAAAGAAGAAGATGTTATTCATCTCAAGGG
TGATGTAAAAGAACATTTTTATGAATTAAAAATTGTAAAAGAAGCTCACAATATGGCATT
TAAAAAATGTACCGTTGAAGAAGGTTTACAATTAAGAGATTTGTTCAATGGAGAGGGTAA
TATTTTTACAACCTCATTTCATATCAATGAGGATAAAAGTGAACTTTCTCAACTCTTTAT
TGACAATTGCATTGAAAAGGGTGTTAGTGCCGTTCCACATTTGGTGTATAATGGTGCATC
TTCATTACTCACAATTGATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGATTAAA
TGGTTTGTCAAACTACATCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAACCTCAAGA
TCACATTTTTGGTAAAATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAATACTA
TATGTTTATGAAACGTATTAGTGAATTACTTGACAACTAAAATCAACAAGATGTTCCAAA
CTCAAATCATTCA

---KMLNRNQKYDLHTIILNSKSLRKHHIKEEDVIHLKGDVKEHFYELKIVKEAHNMAFK
KCTVEEGLQLRDLFNGEGNIFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASS
LLTIDVNGEEYEISRKRLNGLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYM
FMKRISELLDN*nqqdvpnsnhs

Frame A:
---kkc*teiknmiytllf*ivkv*esiiskkkmlfisrvm*knifmn*kl*kkltiwhl
knvplkkvyn*eicsmerviflqphfismrikvnflnslltialkrvlvpfhiwcimvhl
hysqlmsmvknmksaekd*mvcqttskvftqleiclnlkitflvksiqvelfkel*rnti
cl*nvlvnylttkinkmfqtqii


Frame B:
---knvkqkski*fthyyfk**kfkkasyqrrrcyssqg*ckrtfl*iknckrssqygi*
kmyr*rrftikrfvqwrg*yfynlisyq*g*k*tfstly*qlh*kgc*crstfgv*wcif
ithn*cqw*ri*nqqkkikwfvklhqkcllnwrfa*tsrshfw*npsk*nfsknfeeily
vyety**it*qlkstrcsklksf


Frame C:
---KMLNRNQKYDLHTIILNSKSLRKHHIKEEDVIHLKGDVKEHFYELKIVKEAHNMAFK
KCTVEEGLQLRDLFNGEGNIFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASS
LLTIDVNGEEYEISRKRLNGLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYM
FMKRISELLDN*nqqdvpnsnhs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK841 (SSK841Q) /CSM/SS/SSK8-B/SSK841Q.Seq.d/                       1181   0.0
SSK556 (SSK556Q) /CSM/SS/SSK5-C/SSK556Q.Seq.d/                       1181   0.0
SSG806 (SSG806Q) /CSM/SS/SSG8-A/SSG806Q.Seq.d/                       1181   0.0
SSF809 (SSF809Q) /CSM/SS/SSF8-A/SSF809Q.Seq.d/                       1181   0.0
SSG616 (SSG616Q) /CSM/SS/SSG6-A/SSG616Q.Seq.d/                       1179   0.0
SSF627 (SSF627Q) /CSM/SS/SSF6-B/SSF627Q.Seq.d/                       1179   0.0
SSM290 (SSM290Q) /CSM/SS/SSM2-D/SSM290Q.Seq.d/                       1174   0.0
SSH888 (SSH888Q) /CSM/SS/SSH8-D/SSH888Q.Seq.d/                       1170   0.0
SSC353 (SSC353Q) /CSM/SS/SSC3-C/SSC353Q.Seq.d/                       1168   0.0
SSD303 (SSD303Q) /CSM/SS/SSD3-A/SSD303Q.Seq.d/                       1158   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1181   0.0    1
AC073804|AC073804.1 Mus musculus clone RP23-458N3, WORKING DRAFT SEQUENCE, 105 unordered pieces.    42   4e-04  9
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    34   0.007  10
Z79752|Z79752.2 Caenorhabditis elegans cosmid D2005.               38   0.019  5
AC020714|AC020714.2 Homo sapiens chromosome 8 clone RP11-446H10, WORKING DRAFT SEQUENCE, 7 unordered pieces.    32   0.020  10
AC126875|AC126875.2 Rattus norvegicus clone CH230-50H11, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42   0.023  8
AL606751|AL606751.5 Zebrafish DNA sequence from clone BUSM1-173A8 in linkage group 1  Contains a novel gene similar to human and mouse ITSN1 (intersectin, SH3 domain protein).    36   0.036  6
AC023853|AC023853.4 Homo sapiens chromosome 4 clone RP11-110C16 map 4, WORKING DRAFT SEQUENCE, 9 unordered pieces.    40   0.043  8
AC084866|AC084866.5 Homo sapiens BAC clone RP11-6E9 from 4, complete sequence.    38   0.046  6
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38   0.052  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86I43) RecName: Full=Uncharacterized protein DDB_G0275161;  &A...   379   e-104
AE017332_42(AE017332|pid:none) Mycoplasma hyopneumoniae 232, com...    36   0.97
AE014187_502(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.97
AE017244_42(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, co...    36   0.97
CP000713_1273(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl...    35   1.3
CP000498_625(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    35   2.2
AE014187_709(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.8
AY820142_1(AY820142|pid:none) Brassica rapa disease resistance-l...    34   3.7
AL670542_12(AL670542|pid:none) Neurospora crassa DNA linkage gro...    34   3.7
AL844509_382(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.3

 psg: 0.81  gvh: 0.18  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for SSG806 is nuc

>SSG806Z.Seq
----------AAAAAAATGTTAAACAGAAATCAAAAATATGATTTACACACTATTATTTT
AAATAGTAAAAGTTTAAGAAAGCATCATATCAAAGAAGAAGATGTTATTCATCTCAAGGG
TGATGTAAAAGAACATTTTTATGAATTAAAAATTGTAAAAGAAGCTCACAATATGGCATT
TAAAAAATGTACCGTTGAAGAAGGTTTACAATTAAGAGATTTGTTCAATGGAGAGGGTAA
TATTTTTACAACCTCATTTCATATCAATGAGGATAAAAGTGAACTTTCTCAACTCTTTAT
TGACAATTGCATTGAAAAGGGTGTTAGTGCCGTTCCACATTTGGTGTATAATGGTGCATC
TTCATTACTCACAATTGATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGATTAAA
TGGTTTGTCAAACTACATCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAACCTCAAGA
TCACATTTTTGGTAAAATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAATACTA
TATGTTTATGAAACGTATTAGTGAATTACTTGACAACTAAAATCAACAAGATGTTCCAAA
CTCAAATCATTCA