SSG804
Library SS
(Link to library)
Clone ID SSG804
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16354-1
Original site URL
Representative seq. ID SSG804Z
(Link to Original site)
Representative DNA sequence
>SSG804 (SSG804Q) /CSM/SS/SSG8-A/SSG804Q.Seq.d/
XXXXXXXXXXAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTAAGAAAATTT
GATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAACC
GGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAG
GATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAA
TTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAG
GATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCA
ATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGA
TTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAA
TAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTA
AAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATAATTTTAAAGATTT
AGTATGTTTTATTTAAAAAAAAA
sequence update 1997.12. 7
Translated Amino Acid sequence
---MDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDKD
GIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAI
APLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflk
kfk*ink*kiif*k*f*rfsmfylkk


Translated Amino Acid sequence (All Frames)
Frame A:
---nglcnykrcrgyvkki*fkw*w*yyi**scktfegnrfkrsitcclfnvyfs**g*g
wnyfnkrdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlgk*kqsrcn
cstydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*stfiififk
ki*ink*iknnllkiilki*yvlfkkk


Frame B:
---MDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDKD
GIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAI
APLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflk
kfk*ink*kiif*k*f*rfsmfylkk


Frame C:
---wivqlqkm*ric*enliqmvmvilhlmkl*nv*rkpvqkihyvlplqclfllirirm
elfq*krfmairlmllqrnckrqlttsvtts*kamtlirmegshgmkyaig*iktiqmql
lhl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*lliniynfhf*k
nlnk*inkk*sfknnfkdlvcfi*kk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM673 (SSM673Q) /CSM/SS/SSM6-D/SSM673Q.Seq.d/ 1047 0.0
SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/ 1047 0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/ 1047 0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/ 1047 0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/ 1047 0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/ 1047 0.0
SSK850 (SSK850Q) /CSM/SS/SSK8-C/SSK850Q.Seq.d/ 1047 0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/ 1047 0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/ 1047 0.0
SSK703 (SSK703Q) /CSM/SS/SSK7-A/SSK703Q.Seq.d/ 1047 0.0

own update 2000. 8.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein. 1047 0.0 1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence. 989 0.0 5
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 32 0.005 13
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 36 0.015 11
AC079035|AC079035.46 Homo sapiens 12 BAC RP11-863H1 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 40 0.027 8
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3. 34 0.029 11
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 38 0.034 10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 32 0.052 14
AJ224357|AJ224357.1 Lycopersicon esculentum mRNA for tDET1 protein. 38 0.067 3
BQ875038|BQ875038.1 QGI6P19.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI6P19, mRNA sequence. 42 0.070 2
dna update 2004. 2.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2; &S62881(S6288... 79 8e-14
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=... 69 8e-11
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=... 69 1e-10
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA... 69 1e-10
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ... 67 3e-10
(Q54RF4) RecName: Full=Calcium-binding protein 4a; 67 3e-10
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha; 57 4e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara... 56 9e-07
EF523472_1(EF523472|pid:none) Synthetic construct putative aller... 55 2e-06
(O64943) RecName: Full=Polcalcin Jun o 2; AltName: Full=Calcium-... 55 2e-06
protein update 2009. 6.12
PSORT

psg: 0.75 gvh: 0.27 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for SSG804 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG804Z
3' end seq.
>SSG804Z.Seq
----------AAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTAAGAAAATTT
GATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAACC
GGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAG
GATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAA
TTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAG
GATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCA
ATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGA
TTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAA
TAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTA
AAAAAATTTAAATAAATAAATAAATAAAAAATAATCTTTTAAAAATAATTTTAAAGATTT
AGTATGTTTTATTTAAAAAAAAA
Length of 3' end seq. 613
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -