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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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SSG777
Library SS
(Link to library)
Clone ID SSG777
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16352-1
Original site URL
Representative seq. ID SSG777E
(Link to Original site)
Representative DNA sequence 
>SSG777 (SSG777Q) /CSM/SS/SSG7-D/SSG777Q.Seq.d/
CTTCTACTAATAATTAAATTATAAAATGTTATTCAAATCATTACAATCAATCTCAAGTGT
TAACTCAATCCAAAAGAATCAAATTTCTTCAGTTTCAGTAGGAAGCTCACAATCAAATAA
TAATGCAGCACTCTTAGATGCTGCAGCACTTGTTGTAATTCCAGGTTTATTAGCAGTTGC
TGCCGTTGCTCATATTTAAATCCTCAAATATCTTCAAACATTTATGAATATTTAATTTTT
TTTTTAATAAATAATTTATTTTATTATTCATTTTTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
sequence update 1997.12. 7
Translated Amino Acid sequence 
llliikl*nviqiitinlkc*lnpkesnffsfsrkltik**CSTLRCCSTCCNSRFISSC
CRCSYLNPQISSNIYEYLIFFLINNLFYYSFFKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
llliikl*nviqiitinlkc*lnpkesnffsfsrkltik**CSTLRCCSTCCNSRFISSC
CRCSYLNPQISSNIYEYLIFFLINNLFYYSFFKKKKKKKKKKKKK


Frame B:
fy**lnykmlfkslqsissvnsiqknqissvsvgssqsnnnaalldaaalvvipgllava
avahi*ilkylqtfmni*fff**iiyfiihflkkkkkkkkkkkkk


Frame C:
stnn*iikcysnhynqsqvltqskrikflqfq*eahnqiimqhs*mlqhll*fqvy*qll
pllifkssnifkhl*ifnfffnk*fillfif*kkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG777 (SSG777Q) /CSM/SS/SSG7-D/SSG777Q.Seq.d/                        488   e-137
SHD393 (SHD393Q) /CSM/SH/SHD3-D/SHD393Q.Seq.d/                        488   e-137
SHD382 (SHD382Q) /CSM/SH/SHD3-D/SHD382Q.Seq.d/                        488   e-137
SSJ728 (SSJ728Q) /CSM/SS/SSJ7-B/SSJ728Q.Seq.d/                        476   e-133
SSL820 (SSL820Q) /CSM/SS/SSL8-A/SSL820Q.Seq.d/                        474   e-133
SSJ313 (SSJ313Q) /CSM/SS/SSJ3-A/SSJ313Q.Seq.d/                        472   e-132
SSJ788 (SSJ788Q) /CSM/SS/SSJ7-D/SSJ788Q.Seq.d/                        464   e-130
SSD125 (SSD125Q) /CSM/SS/SSD1-B/SSD125Q.Seq.d/                        462   e-129
SSK635 (SSK635Q) /CSM/SS/SSK6-B/SSK635Q.Seq.d/                        458   e-128
SSI321 (SSI321Q) /CSM/SS/SSI3-A/SSI321Q.Seq.d/                        456   e-128
own update 2002.12.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36   3e-07  10
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    44   4e-07  10
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    40   1e-05  7
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    36   6e-05  10
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    36   6e-05  9
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            40   3e-04  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   3e-04  12
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   4e-04  8
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    36   9e-04  7
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           42   0.001  14
dna update 2004. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M59) RecName: Full=Uncharacterized transmembrane protein DDB...    33   2.4
(Q54R31) RecName: Full=Uncharacterized transmembrane protein DDB...    33   2.4
protein update 2009. 3. 6
PSORT 

 psg: 0.81  gvh: 0.53  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.54  mip: 0.00
 nuc: 0.52  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for SSG777 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSG777E
Full length Seq. 
>SSG777E.Seq
CTTCTACTAATAATTAAATTATAAAATGTTATTCAAATCATTACAATCAATCTCAAGTGT
TAACTCAATCCAAAAGAATCAAATTTCTTCAGTTTCAGTAGGAAGCTCACAATCAAATAA
TAATGCAGCACTCTTAGATGCTGCAGCACTTGTTGTAATTCCAGGTTTATTAGCAGTTGC
TGCCGTTGCTCATATTTAAATCCTCAAATATCTTCAAACATTTATGAATATTTAATTTTT
TTTTTAATAAATAATTTATTTTATTATTCATTTTTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
Length of full length seq. 317