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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG766
Library SS
(Link to library)
Clone ID SSG766
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13408-1|Contig-U15751-1
Original site URL
Representative seq. ID SSG766P
(Link to Original site)
Representative DNA sequence 
>SSG766 (SSG766Q) /CSM/SS/SSG7-C/SSG766Q.Seq.d/
CTAGAAATTGTGTTGTACTATCACAAGGTTCTATTGAACAATTTGGTATAATCGGTGAAG
ATAGTGAAGAGTCAAAGAACGATAACCCATTAAGATACTACCAACAACCCGACCGAATTA
AACCAGTCCCTTACACCACATGGAAAGATTTCTTTAAAGGTTTCTATATGAACCTTTTCG
CAATAATCCTACTTCACGGCTTAAAGAAATCCTATAAACGTTATTCAGGTTTAAAAAATG
GTTTCTACGTTTCAATTGGTTGTTCAACTATGATCATAGTTTGGATTTNACNTTGGTCAT
TAAACGGTTGGGATTACATAACTTATAATTTCCCATTCCCACTATTACCAAATTTAAATA
AATCAACCACCACTACCACCACCATCATTCCATCATCATCAACATCATCAACATCACCAA
CGTCATCACCATCACCATCACCATCATTATCATCAACATCATCATCATCATCATCATCAA
TTGAATATGTTGAATCATTAACAACAAATGAGTTAATGAAAATTGCATTTTTACAATCAA
TTTATTATGTGATATCATGGGCAATTGCAXXXXXXXXXXCATAGAAGAGGAAAGATTATT
ATCTTCATCAACTCAAATTAAAAATATAATTGAAGATTCAATTGATTATAATGAAATTAT
AATTAATAATGGTAGTCAAAATTATAAAACAATTAATAATTCAATTTTTAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATAAATAT
AAATATTAATAATAGTAATAATAATAATATACCCGAAGGTATAGCCAATAATAAAAATAA
TTATAATTTTGATGATTAAATAAAATGTATTTGGTCATTTTAATTATAAATAAAAAAAAA
AAA
sequence update 1998.10.29
Translated Amino Acid sequence 
RNCVVLSQGSIEQFGIIGEDSEESKNDNPLRYYQQPDRIKPVPYTTWKDFFKGFYMNLFA
IILLHGLKKSYKRYSGLKNGFYVSIGCSTMIIVWIXXWSLNGWDYITYNFPFPLLPNLNK
STTTTTTIIPSSSTSSTSPTSSPSPSPSLSSTSSSSSSSIEYVESLTTNELMKIAFLQSI
YYVISWAIA---

---IEEERLLSSSTQIKNIIEDSIDYNEIIINNGSQNYKTINNSIFNNNNNNNNNNNNNN
NNNNNNNINININNSNNNNIPEGIANNKNNYNFDD*ikciwsf*l*ikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
leivlyyhkvllnnlv*svkivksqrtith*dttnnptelnqsltphgkislkvsi*tfs
q*syfta*rnpinviqv*kmvstfqlvvql*s*fgfxxgh*tvgit*liishshyyqi*i
nqpplpppsfhhhqhhqhhqrhhhhhhhhyhqhhhhhhhqlnmlnh*qqms**klhfynq
fim*yhgql---

---hrrgkiiifinsn*kyn*rfn*l**nyn**w*skl*nn**fnf**************
*******ykyky*******ytrrysq**k*l*f**lnkmylviliinkkkk

Frame B:
*klcctitrfy*tiwynr*r**rvker*pikilpttrpn*tsplhhmerfl*rflyepfr
nnptsrlkeil*tlfrfkkwflrfnwlfnydhsldxtlvikrlglhnl*fpiptitkfk*
inhhyhhhhsiiiniinitnvitititiiiiniiiiiiin*ic*iinnk*vnenciftin
llcdimgnc---

---IEEERLLSSSTQIKNIIEDSIDYNEIIINNGSQNYKTINNSIFNNNNNNNNNNNNNN
NNNNNNNINININNSNNNNIPEGIANNKNNYNFDD*ikciwsf*l*ikkk

Frame C:
RNCVVLSQGSIEQFGIIGEDSEESKNDNPLRYYQQPDRIKPVPYTTWKDFFKGFYMNLFA
IILLHGLKKSYKRYSGLKNGFYVSIGCSTMIIVWIXXWSLNGWDYITYNFPFPLLPNLNK
STTTTTTIIPSSSTSSTSPTSSPSPSPSLSSTSSSSSSSIEYVESLTTNELMKIAFLQSI
YYVISWAIA---

---*krkdyylhqlklki*lkiqliimkl*limvvkiikqliiqfliiiiiiiiiiiiii
iiiiiii*i*iliiviiiiypkv*piikiiiilmik*nvfghfnyk*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG766 (SSG766Q) /CSM/SS/SSG7-C/SSG766Q.Seq.d/                        702   0.0
SHF844 (SHF844Q) /CSM/modify/removed090331/SHF844Q.Seq.d/             186   4e-46
SHF874 (SHF874Q) /CSM/SH/SHF8-D/SHF874Q.Seq.d/                        186   4e-46
SSJ410 (SSJ410Q) /CSM/SS/SSJ4-A/SSJ410Q.Seq.d/                         44   0.004
SSI111 (SSI111Q) /CSM/SS/SSI1-A/SSI111Q.Seq.d/                         38   0.23
SFF869 (SFF869Q) /CSM/SF/SFF8-C/SFF869Q.Seq.d/                         38   0.23
AHK848 (AHK848Q) /CSM/AH/AHK8-B/AHK848Q.Seq.d/                         38   0.23
AFN249 (AFN249Q) /CSM/AF/AFN2-C/AFN249Q.Seq.d/                         38   0.23
AFH241 (AFH241Q) /CSM/AF/AFH2-B/AFH241Q.Seq.d/                         38   0.23
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE015937|AE015937.1 Clostridium tetani E88, section 2 of 10 of the complete genome.    36   0.008  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   0.012  12
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   0.013  10
AB102780|AB102780.1 Dictyostelium discoideum K4 mRNA for kinesin-related protein K4, complete cds.    40   0.017  3
BZ057074|BZ057074.1 lky35e04.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44   0.045  2
Z98600|Z98600.1 S.pombe chromosome I cosmid c20G4.                 50   0.056  1
L37838|L37838.1 Schizosaccharomyces pombe fus1 gene, complete cds.    50   0.056  1
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   0.10   13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.12   12
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    32   0.15   12
dna update 2004. 2.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ151945_1(FJ151945|pid:none) Ensatina eschscholtzii xanthoptica...    34   7.6
FJ151867_1(FJ151867|pid:none) Ensatina eschscholtzii xanthoptica...    34   7.6
AE009951_929(AE009951|pid:none) Fusobacterium nucleatum subsp. n...    33   9.9
FJ151878_1(FJ151878|pid:none) Ensatina eschscholtzii xanthoptica...    33   9.9
FJ151848_1(FJ151848|pid:none) Ensatina eschscholtzii xanthoptica...    33   9.9
FJ151923_1(FJ151923|pid:none) Ensatina eschscholtzii xanthoptica...    33   9.9
protein update 2009. 6.12
PSORT 

 psg: 0.85  gvh: 0.37  alm: 0.33  top: 0.13  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSG766 is cyt
5' end seq. ID SSG766F
5' end seq. 
>SSG766F.Seq
CTAGAAATTGTGTTGTACTATCACAAGGTTCTATTGAACAATTTGGTATAATCGGTGAAG
ATAGTGAAGAGTCAAAGAACGATAACCCATTAAGATACTACCAACAACCCGACCGAATTA
AACCAGTCCCTTACACCACATGGAAAGATTTCTTTAAAGGTTTCTATATGAACCTTTTCG
CAATAATCCTACTTCACGGCTTAAAGAAATCCTATAAACGTTATTCAGGTTTAAAAAATG
GTTTCTACGTTTCAATTGGTTGTTCAACTATGATCATAGTTTGGATTTNACNTTGGTCAT
TAAACGGTTGGGATTACATAACTTATAATTTCCCATTCCCACTATTACCAAATTTAAATA
AATCAACCACCACTACCACCACCATCATTCCATCATCATCAACATCATCAACATCACCAA
CGTCATCACCATCACCATCACCATCATTATCATCAACATCATCATCATCATCATCATCAA
TTGAATATGTTGAATCATTAACAACAAATGAGTTAATGAAAATTGCATTTTTACAATCAA
TTTATTATGTGATATCATGGGCAATTGCA----------
Length of 5' end seq. 569
3' end seq. ID SSG766Z
3' end seq. 
>SSG766Z.Seq
----------CATAGAAGAGGAAAGATTATTATCTTCATCAACTCAAATTAAAAATATAA
TTGAAGATTCAATTGATTATAATGAAATTATAATTAATAATGGTAGTCAAAATTATAAAA
CAATTAATAATTCAATTTTTAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATATAAATATAAATATTAATAATAGTAATAATAATAATA
TACCCGAAGGTATAGCCAATAATAAAAATAATTATAATTTTGATGATTAAATAAAATGTA
TTTGGTCATTTTAATTATAAATAAAAAAAAAAAA
Length of 3' end seq. 324
Connected seq. ID SSG766P
Connected seq. 
>SSG766P.Seq
CTAGAAATTGTGTTGTACTATCACAAGGTTCTATTGAACAATTTGGTATAATCGGTGAAG
ATAGTGAAGAGTCAAAGAACGATAACCCATTAAGATACTACCAACAACCCGACCGAATTA
AACCAGTCCCTTACACCACATGGAAAGATTTCTTTAAAGGTTTCTATATGAACCTTTTCG
CAATAATCCTACTTCACGGCTTAAAGAAATCCTATAAACGTTATTCAGGTTTAAAAAATG
GTTTCTACGTTTCAATTGGTTGTTCAACTATGATCATAGTTTGGATTTNACNTTGGTCAT
TAAACGGTTGGGATTACATAACTTATAATTTCCCATTCCCACTATTACCAAATTTAAATA
AATCAACCACCACTACCACCACCATCATTCCATCATCATCAACATCATCAACATCACCAA
CGTCATCACCATCACCATCACCATCATTATCATCAACATCATCATCATCATCATCATCAA
TTGAATATGTTGAATCATTAACAACAAATGAGTTAATGAAAATTGCATTTTTACAATCAA
TTTATTATGTGATATCATGGGCAATTGCA----------CATAGAAGAGGAAAGATTATT
ATCTTCATCAACTCAAATTAAAAATATAATTGAAGATTCAATTGATTATAATGAAATTAT
AATTAATAATGGTAGTCAAAATTATAAAACAATTAATAATTCAATTTTTAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATAAATAT
AAATATTAATAATAGTAATAATAATAATATACCCGAAGGTATAGCCAATAATAAAAATAA
TTATAATTTTGATGATTAAATAAAATGTATTTGGTCATTTTAATTATAAATAAAAAAAAA
AAA
Length of connected seq. 893
Full length Seq ID -
Full length Seq. -
Length of full length seq. -