>SSG716 (SSG716Q) /CSM/SS/SSG7-A/SSG716Q.Seq.d/
AATCAAATAAATGATTTATATTAAAAAATGTCCAGAGTAATTCATATTTCATCTAATGAA
GAATTAGATAAACATTTGCAAGCTGAAAGATTAGTGATTGACTTTAGTGCTGCATGGTGT
GGTCCATGTAGAGCAATATCTCCGGTATTTGAAAAGCTTTCAAACGAATTTGTAACATTT
ACATTCGTTCATGTTGACATTGATAAACTAAGTGGTCATCCAATAGTAAAAGAAATTAGA
AGTGTTCCTACATTCTATTTTTACAGAAATGGAGCTAAAGTATCAGAATTCAGTGGTGCC
AATGAAGCAACTCTAAGAAGTACTCTAGAAGCAAACAAATAATTTTTTGTTAAATTAATA
ATTGTACAAAAAATGCAACAAATTAAATAAATAAAAAAAAAAAAATAATTCACAAATTAA
AAAAAAAAAAAAAAAA

nqindly*KMSRVIHISSNEELDKHLQAERLVIDFSAAWCGPCRAISPVFEKLSNEFVTF
TFVHVDIDKLSGHPIVKEIRSVPTFYFYRNGAKVSEFSGANEATLRSTLEANK*ffvkli
ivqkmqqik*ikkkk*ftn*kkkkk

Frame A:
nqindly*KMSRVIHISSNEELDKHLQAERLVIDFSAAWCGPCRAISPVFEKLSNEFVTF
TFVHVDIDKLSGHPIVKEIRSVPTFYFYRNGAKVSEFSGANEATLRSTLEANK*ffvkli
ivqkmqqik*ikkkk*ftn*kkkkk


Frame B:
ik*miyikkcpe*fifhlmkn*inicklkd**ltlvlhgvvhveqylrylksfqtnl*hl
hsfmltlin*vviq**kklevflhsiftemelkyqnsvvpmkql*evl*kqtnnflln**
lykkcnklnk*kkknnsqikkkkkk


Frame C:
snk*filknvqsnsyfi**rir*tfas*kisd*l*ccmvwsm*snisgi*kafkricniy
irsc*h**tkwssnskrn*kcsyilflqkws*siriqwcq*snskkysrskqiifc*inn
ctknatn*inkkkkiihklkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG716 (SSG716Q) /CSM/SS/SSG7-A/SSG716Q.Seq.d/                        777   0.0
VSJ416 (VSJ416Q) /CSM/VS/VSJ4-A/VSJ416Q.Seq.d/                        769   0.0
SSM584 (SSM584Q) /CSM/SS/SSM5-D/SSM584Q.Seq.d/                        769   0.0
SSM341 (SSM341Q) /CSM/SS/SSM3-B/SSM341Q.Seq.d/                        769   0.0
SSA493 (SSA493Q) /CSM/SS/SSA4-D/SSA493Q.Seq.d/                        769   0.0
AHG261 (AHG261Q) /CSM/AH/AHG2-C/AHG261Q.Seq.d/                        769   0.0
VSI646 (VSI646Q) /CSM/VS/VSI6-B/VSI646Q.Seq.d/                        767   0.0
SSE809 (SSE809Q) /CSM/SS/SSE8-A/SSE809Q.Seq.d/                        767   0.0
VSD821 (VSD821Q) /CSM/VS/VSD8-A/VSD821Q.Seq.d/                        763   0.0
VSD665 (VSD665Q) /CSM/VS/VSD6-C/VSD665Q.Seq.d/                        763   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M91383|M91383.1 Dictyostelium discoideum thioredoxin (TRX3) mRNA, complete cds.   553  e-154  1
M91384|M91384.1 Dictyostelium discoideum thioredoxin (TRX1) mRNA, complete cds.   513  e-152  2
M91382|M91382.1 Dictyostelium discoideum thioredoxin (TRX2) mRNA, 5' end.   541  e-150  1
AE011618|AE011618.1 Leptospira interrogans serovar lai str. 56601 chromosome II, section 30 of 34 of the complete sequence.    46  0.19  2
BI207772|BI207772.1 EST525812 cTOS Lycopersicon esculentum cDNA clone cTOS15G5 5' end, mRNA sequence.    46  0.36  1
BE433192|BE433192.1 EST399721 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG12L15, mRNA sequence.    46  0.36  1
AW037917|AW037917.1 EST279561 tomato mixed elicitor, BTI Lycopersicon esculentum cDNA clone cLET2J12, mRNA sequence.    46  0.36  1
BQ511729|BQ511729.2 EST619144 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHT41 3' end, mRNA sequence.    46  0.36  1
BI203481|BI203481.1 EST521521 cTOS Lycopersicon esculentum cDNA clone cTOS1L4 5' end, mRNA sequence.    46  0.36  1
AI781937|AI781937.1 EST262816 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES17J17, mRNA sequence.    46  0.36  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P29447) RecName: Full=Thioredoxin-3;          Short=Trx-3;           185   5e-46
C46264(C46264) thioredoxin 3 - slime mold (Dictyostelium discoid...   182   3e-45
(P29446) RecName: Full=Thioredoxin-2;          Short=Trx-2; Flag...   182   4e-45
BC129794_1(BC129794|pid:none) Xenopus laevis hypothetical protei...    94   2e-18
FN392322_288(FN392322|pid:none) Pichia pastoris GS115 chromosome...    93   3e-18
BC166957_1(BC166957|pid:none) Xenopus tropicalis hypothetical pr...    92   4e-18
BC072884_1(BC072884|pid:none) Xenopus laevis MGC80314 protein, m...    91   1e-17
(Q9DGI3) RecName: Full=Thioredoxin;          Short=Trx;  &AF2936...    87   2e-16
FJ384985_1(FJ384985|pid:none) Bombina orientalis thioredoxin mRN...    85   7e-16
DQ215312_1(DQ215312|pid:none) Taeniopygia guttata clone 0058P004...    85   9e-16

 psg: 0.69  gvh: 0.65  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSG716 is nuc

>SSG716E.Seq
AATCAAATAAATGATTTATATTAAAAAATGTCCAGAGTAATTCATATTTCATCTAATGAA
GAATTAGATAAACATTTGCAAGCTGAAAGATTAGTGATTGACTTTAGTGCTGCATGGTGT
GGTCCATGTAGAGCAATATCTCCGGTATTTGAAAAGCTTTCAAACGAATTTGTAACATTT
ACATTCGTTCATGTTGACATTGATAAACTAAGTGGTCATCCAATAGTAAAAGAAATTAGA
AGTGTTCCTACATTCTATTTTTACAGAAATGGAGCTAAAGTATCAGAATTCAGTGGTGCC
AATGAAGCAACTCTAAGAAGTACTCTAGAAGCAAACAAATAATTTTTTGTTAAATTAATA
ATTGTACAAAAAATGCAACAAATTAAATAAATAAAAAAAAAAAAATAATTCACAAATTAA
AAAAAAAAAAAAAAAA