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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG705
Library SS
(Link to library)
Clone ID SSG705
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID SSG705E
(Link to Original site)
Representative DNA sequence 
>SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/
GCTCCACCACCACCACCATCCCATAAGACACCTGCAGCTCCACCATCAGGCGGAGGTGCT
CCACCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCNACANACACCA
ATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGAT
CTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTC
CCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCA
GCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACGAT
GATGAATGGTCAGATTATTAAATTATTCTTTAACAAAATTCAAATTCAAAAAAATCATTA
AATAAAGATTTCTTTATTTCTTTCACCAAAAAA
sequence update 1997.12. 5
Translated Amino Acid sequence 
APPPPPSHKTPAAPPSGGGAPPPPPPPPPPSSGPPPXXTPMASAPPSSGGGGASGGGRND
LLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDD
DEWSDY*iil*qnsnskkslnkdffisftkk
Translated Amino Acid sequence (All Frames) 
Frame A:
APPPPPSHKTPAAPPSGGGAPPPPPPPPPPSSGPPPXXTPMASAPPSSGGGGASGGGRND
LLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDD
DEWSDY*iil*qnsnskkslnkdffisftkk


Frame B:
lhhhhhpirhlqlhhqaevlhhhhhlhhhllvvhhlxxhqwpvllhhqevvvpaaveemi
fwlpfvvvqvlrllikpihsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkkmmmtm
mngqiiklffnkiqiqknh*ikislflspk


Frame C:
sttttip*dtcsstirrrcstttttstttf*wsttstxtngqcssiirrwwcqrrwkk*s
fgfhs*wcks*gc**nqstprysksw**rftffs*yfscsyg*s*rwyerr**rr***r*
*mvrllnysltkfkfkkiik*rflyffhqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        402   e-111
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        402   e-111
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        402   e-111
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/                        402   e-111
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        402   e-111
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/                        402   e-111
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        402   e-111
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/                        402   e-111
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/                        402   e-111
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/                        402   e-111
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds.   402  e-166  4
BQ258443|BQ258443.1 fz79g06.y1 Sugano SJD adult male Danio rerio cDNA clone 5914930 5' similar to SW:ROA1_HUMAN P09651 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 ;, mRNA sequence.    50  0.024  1
C11739|C11739.1 C.elegans cDNA clone yk122e3 : 5' end, single read.    36  0.036  2
AY088091|AY088091.1 Arabidopsis thaliana clone 41181 mRNA, complete sequence.    46  0.20  2
AL247844|AL247844.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 033A03 of library G from Tetraodon nigroviridis.    42  0.32  2
CB058282|CB058282.1 NISC_jx02e04.w1 Soares NMBPA Mus musculus cDNA clone IMAGE:5023951 5', mRNA sequence.    46  0.38  1
BQ553862|BQ553862.1 H4024F10-5 NIA Mouse 7.4K cDNA Clone Set Mus musculus cDNA clone H4024F10 5', mRNA sequence.    46  0.38  1
AC134402|AC134402.3 Mus musculus clone RP24-301D19, WORKING DRAFT SEQUENCE, 24 unordered pieces.    46  0.38  1
AL844871|AL844871.11 Mouse DNA sequence from clone RP23-271B15 on chromosome 2.    42  0.39  4
AC125660|AC125660.4 Rattus norvegicus clone CH230-166E14, WORKING DRAFT SEQUENCE, 3 unordered pieces.    40  0.67  4
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...    83   3e-15
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso...    39   0.043
AM446570_1(AM446570|pid:none) Vitis vinifera contig VV78X034573....    26   3.2
DQ985464_1(DQ985464|pid:none) Suberites domuncula Wiskott-Aldric...    32   6.9
protein update 2009. 3. 6
PSORT 

 psg: 0.82  gvh: 0.49  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSG705 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSG705E
Full length Seq. 
>SSG705E.Seq
GCTCCACCACCACCACCATCCCATAAGACACCTGCAGCTCCACCATCAGGCGGAGGTGCT
CCACCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCNACANACACCA
ATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGAT
CTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTC
CCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCA
GCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACGAT
GATGAATGGTCAGATTATTAAATTATTCTTTAACAAAATTCAAATTCAAAAAAATCATTA
AATAAAGATTTCTTTATTTCTTTCACCAAAAAA
Length of full length seq. 453