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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG690
Library SS
(Link to library)
Clone ID SSG690
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03439-1
Original site URL
Representative seq. ID SSG690E
(Link to Original site)
Representative DNA sequence 
>SSG690 (SSG690Q) /CSM/SS/SSG6-D/SSG690Q.Seq.d/
AATTATGATAATGATAATCGGTTCTATATGGAGCCAAAGAAAATGTTAGATATTTCAGTG
GTCGATTCAATTCGTGCCACTAGTGGAATTCCTTTACTATTCAATGTACCAAGATATCAA
GGTAAAAACTTTTTAGATGGTGGTTATTTAAATAATAATCCAACACCAATACTTTATCAA
GAGGCAATTTCATTATTTGGTGGTGAGAATTCAAAAGATTTCATATTCATTTCCATTGGT
ACTGGTAGAAAACCAACAACAAATTTTTCAAGTAAATTGATTGCTGGTGCAAAATTACCA
TTTAAATATTCAAATACAATTGTTAATAATCTGACTGGTATTGAATTGGATTCACCAATT
CATAGAATTGTAAATTTCATGACTTCATCTGGTGAAGAATCTCATTTACAATTTAAAAAT
GCTCATCCAGATTTATCATATTTCAGATTTGATACATATATCGATAAAGATATTGCTGTT
AATGATGCCTCGGACGAGACTATTGAATATATGAAAAAATCNACAANTGNTTNTTTAAAT
TCNGNTGAATGTNAAAAATTNATTTCNGATTTAAAANAATTAATNATTTAAAAAAAAAAA
AAAAAAAAAAAACANAAAAATGTATTTTAAATTTAAAGAAATATGGCAAATTGGTTTATT
TTTGGAATTTAAAAAAAAAATTTAAAAAAAAAAGAACAATTTAAAAAATAAAAAAAAAAA
AAAAAAAAA
sequence update 1999. 6.10
Translated Amino Acid sequence 
NYDNDNRFYMEPKKMLDISVVDSIRATSGIPLLFNVPRYQGKNFLDGGYLNNNPTPILYQ
EAISLFGGENSKDFIFISIGTGRKPTTNFSSKLIAGAKLPFKYSNTIVNNLTGIELDSPI
HRIVNFMTSSGEESHLQFKNAHPDLSYFRFDTYIDKDIAVNDASDETIEYMKKSTXXXLN
SXECXKXISDLKXLXI*kkkkkkkxknvf*i*rnmanwfifgi*kknlkkkeqfkk*kkk
kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
NYDNDNRFYMEPKKMLDISVVDSIRATSGIPLLFNVPRYQGKNFLDGGYLNNNPTPILYQ
EAISLFGGENSKDFIFISIGTGRKPTTNFSSKLIAGAKLPFKYSNTIVNNLTGIELDSPI
HRIVNFMTSSGEESHLQFKNAHPDLSYFRFDTYIDKDIAVNDASDETIEYMKKSTXXXLN
SXECXKXISDLKXLXI*kkkkkkkxknvf*i*rnmanwfifgi*kknlkkkeqfkk*kkk
kkk


Frame B:
imimiigsiwsqrkc*ifqwsiqfvplveflyysmyqdikvktf*mvvi*iiiqhqyfik
rqfhylvvriqkisysfplvlvenqqqifqvn*llvqnyhlniqiqllii*lvlnwihqf
iel*is*lhlvknliynlkmliqiyhisdlihisikilllmmprtrllni*knxqxxx*i
xxnvknxfxi*xn*xfkkkkkkknxkmyfkfkeiwqiglflefkkki*kkknnlknkkkk
kk


Frame C:
l****svlygakenvryfsgrfnsch*wnsftiqctkisr*klfrwwlfk**sntntlsr
gnfiiww*efkrfhihfhwyw*ktnnkffk*idcwckiti*ifkync**sdwy*igftns
*nckfhdfiw*risfti*kcssrfiifqi*yiyr*rycc**clgrdy*iyekixxxxfkf
x*mxkixfxfkxinxlkkkkkkktxkcilnlkkygklvyfwnlkkkfkkkrti*kikkkk
kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG690 (SSG690Q) /CSM/SS/SSG6-D/SSG690Q.Seq.d/                       1102   0.0
SSG282 (SSG282Q) /CSM/SS/SSG2-D/SSG282Q.Seq.d/                       1102   0.0
SSK445 (SSK445Q) /CSM/SS/SSK4-B/SSK445Q.Seq.d/                       1031   0.0
SFC668 (SFC668Q) /CSM/SF/SFC6-C/SFC668Q.Seq.d/                        936   0.0
SSG423 (SSG423Q) /CSM/SS/SSG4-A/SSG423Q.Seq.d/                        674   0.0
SFC447 (SFC447Q) /CSM/SF/SFC4-B/SFC447Q.Seq.d/                        561   e-159
SSL819 (SSL819Q) /CSM/SS/SSL8-A/SSL819Q.Seq.d/                        389   e-107
SFK222 (SFK222Q) /CSM/SF/SFK2-A/SFK222Q.Seq.d/                        228   9e-59
VSH292 (VSH292Q) /CSM/VS/VSH2-D/VSH292Q.Seq.d/                         44   0.003
VHN534 (VHN534Q) /CSM/VH/VHN5-B/VHN534Q.Seq.d/                         44   0.003
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL359893|AL359893.16 Human DNA sequence from clone RP11-35N6 on chromosome 9.    52  0.010  1
AQ268682|AQ268682.1 RPCI11-71F2.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-71F2, DNA sequence.    52  0.010  1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34  0.014  9
AC006204|AC006204.1 Homo sapiens PAC clone RP5-1102B4 from 7q11.23-7q21, complete sequence.    34  0.017  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38  0.039  10
AE003559|AE003559.3 Drosophila melanogaster chromosome 3L, section 26 of 83 of the complete sequence.    32  0.14  8
AZ542760|AZ542760.1 ENTET18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.21  2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36  0.34  10
AI807126|AI807126.1 we85h11.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:2347941 3' similar to gb:M22995 RAS-RELATED PROTEIN RAP-1A (HUMAN);, mRNA sequence.    40  0.44  2
AC129259|AC129259.3 Rattus norvegicus clone CH230-15K6, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  0.44  5
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197_19(AC084197|pid:none) Caenorhabditis elegans cosmid Y73...    50   6e-05
CT573075_3(CT573075|pid:none) Zebrafish DNA sequence from clone ...    50   9e-05
(Q5XTS1) RecName: Full=Calcium-independent phospholipase A2-gamm...    49   2e-04
AK002115_1(AK002115|pid:none) Homo sapiens cDNA FLJ11253 fis, cl...    47   8e-04
AC005058_1(AC005058|pid:none) Homo sapiens BAC clone CTB-54D4 fr...    47   8e-04
AF217519_1(AF217519|pid:none) Homo sapiens uncharacterized bone ...    47   8e-04
AK168475_1(AK168475|pid:none) Mus musculus 17 days embryo kidney...    47   8e-04
BC019364_1(BC019364|pid:none) Mus musculus patatin-like phosphol...    47   8e-04
AK024335_1(AK024335|pid:none) Homo sapiens cDNA FLJ14273 fis, cl...    47   8e-04
AK291755_1(AK291755|pid:none) Homo sapiens cDNA FLJ77572 complet...    47   8e-04
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSG690 is cyt
5' end seq. ID SSG690F
5' end seq. 
>SSG690F.Seq
AATTATGATAATGATAATCGGTTCTATATGGAGCCAAAGAAAATGTTAGATATTTCAGTG
GTCGATTCAATTCGTGCCACTAGTGGAATTCCTTTACTATTCAATGTACCAAGATATCAA
GGTAAAAACTTTTTAGATGGTGGTTATTTAAATAATAATCCAACACCAATACTTTATCAA
GAGGCAATTTCATTATTTGGTGGTGAGAATTCAAAAGATTTCATATTCATTTCCATTGGT
ACTGGTAGAAAACCAACAACAAATTTTTCAAGTAAATTGATTGCTGGTGCAAAATTACCA
TTTAAATATTCAAATACAATTGTTAATAATCTGACTGGTATTGAATTGGATTCACCAATT
CATAGAATTGTAAATTTCATGACTTCATCTGGTGAAGAATCTCATTTACAATTTAAAAAT
GCTCATCCAGATTTATCATATTTCAGATTTGATACATATATCGATAAAGATATTGCTGTT
AATGATGCCTCGGACGAGACTATTGAATATATGAAAAAATCAACAAATGATTATTTAAAT
TCTGATGAATGTAAAAAATTAATTTCAGATTTAAAAAAATTAATAATTTAAAA-------
---
Length of 5' end seq. 593
3' end seq. ID SSG690Z
3' end seq. 
>SSG690Z.Seq
----------ATATGAAAAAATCCACAATTGGTTTTTTAAATTCCGGTGNATGTTAAAAA
TTTATTTCCGATTTAAAAGAATTAATTATTTAAAAAAAAAAAAAAAAAAAAAAACANAAA
AATGTATTTTAAATTTAAAGAAATATGGCAAATTGGTTTATTTTTGGAATTTAAAAAAAA
AATTTAAAAAAAAAAGAACAATTTAAAAAATAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 221
Connected seq. ID SSG690P
Connected seq. 
>SSG690P.Seq
AATTATGATAATGATAATCGGTTCTATATGGAGCCAAAGAAAATGTTAGATATTTCAGTG
GTCGATTCAATTCGTGCCACTAGTGGAATTCCTTTACTATTCAATGTACCAAGATATCAA
GGTAAAAACTTTTTAGATGGTGGTTATTTAAATAATAATCCAACACCAATACTTTATCAA
GAGGCAATTTCATTATTTGGTGGTGAGAATTCAAAAGATTTCATATTCATTTCCATTGGT
ACTGGTAGAAAACCAACAACAAATTTTTCAAGTAAATTGATTGCTGGTGCAAAATTACCA
TTTAAATATTCAAATACAATTGTTAATAATCTGACTGGTATTGAATTGGATTCACCAATT
CATAGAATTGTAAATTTCATGACTTCATCTGGTGAAGAATCTCATTTACAATTTAAAAAT
GCTCATCCAGATTTATCATATTTCAGATTTGATACATATATCGATAAAGATATTGCTGTT
AATGATGCCTCGGACGAGACTATTGAATATATGAAAAAATCAACAAATGATTATTTAAAT
TCTGATGAATGTAAAAAATTAATTTCAGATTTAAAAAAATTAATAATTTAAAA-------
---ATATGAAAAAATCCACAATTGGTTTTTTAAATTCCGGTGNATGTTAAAAATTTATTT
CCGATTTAAAAGAATTAATTATTTAAAAAAAAAAAAAAAAAAAAAAACANAAAAATGTAT
TTTAAATTTAAAGAAATATGGCAAATTGGTTTATTTTTGGAATTTAAAAAAAAAATTTAA
AAAAAAAAGAACAATTTAAAAAATAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 814
Full length Seq ID SSG690E
Full length Seq. 
>SSG690E.Seq
AATTATGATAATGATAATCGGTTCTATATGGAGCCAAAGAAAATGTTAGATATTTCAGTG
GTCGATTCAATTCGTGCCACTAGTGGAATTCCTTTACTATTCAATGTACCAAGATATCAA
GGTAAAAACTTTTTAGATGGTGGTTATTTAAATAATAATCCAACACCAATACTTTATCAA
GAGGCAATTTCATTATTTGGTGGTGAGAATTCAAAAGATTTCATATTCATTTCCATTGGT
ACTGGTAGAAAACCAACAACAAATTTTTCAAGTAAATTGATTGCTGGTGCAAAATTACCA
TTTAAATATTCAAATACAATTGTTAATAATCTGACTGGTATTGAATTGGATTCACCAATT
CATAGAATTGTAAATTTCATGACTTCATCTGGTGAAGAATCTCATTTACAATTTAAAAAT
GCTCATCCAGATTTATCATATTTCAGATTTGATACATATATCGATAAAGATATTGCTGTT
AATGATGCCTCGGACGAGACTATTGAATATATGAAAAAATCNACAANTGNTTNTTTAAAT
TCNGNTGAATGTNAAAAATTNATTTCNGATTTAAAANAATTAATNATTTAAAAAAAAAAA
AAAAAAAAAAAACANAAAAATGTATTTTAAATTTAAAGAAATATGGCAAATTGGTTTATT
TTTGGAATTTAAAAAAAAAATTTAAAAAAAAAAGAACAATTTAAAAAATAAAAAAAAAAA
AAAAAAAAA
Length of full length seq. 729