>SSG684 (SSG684Q) /CSM/SS/SSG6-D/SSG684Q.Seq.d/
XXXXXXXXXXAGGTGGTGGTAATTATCATCATGCCGATGGTAAAGGTTATTTCGTTCAAC
CAACTATTTTCACCAATGTCACTGATGATATGACAATTTGTAAAGAAGAAATCTTTGGTC
CTGTTGTTGTAATTTTACCATTCAAAACTGTTGATGAAGTAATTAAAAGAGCAAATAACA
CAACCTATGGTTTAGCAGCTGGTGTTTGGACTAAAGATATCAGTTTAGCATTAAATGTTT
CAAATAAATTAAAAAGTGGTTCAGTTTGGATTAATGAATNTTATTCAATCATGCCATTAA
TACCATTTGGTGCTTATAAACAATCTGGTATTGGTCGTGACCTATCTGAATATGCAATTC
AAAGTTATTTATCTGTTAAAGCTGTTACAATTGCTCATAAAACTTTACATGCTCAACAAC
AATAACAACAACAATCAATAAAATAAAATAATTTGTATGTAAATTATATAAAAA

---GGGNYHHADGKGYFVQPTIFTNVTDDMTICKEEIFGPVVVILPFKTVDEVIKRANNT
TYGLAAGVWTKDISLALNVSNKLKSGSVWINEXYSIMPLIPFGAYKQSGIGRDLSEYAIQ
SYLSVKAVTIAHKTLHAQQQ*qqqsik*nnlyvnyik

Frame A:
---GGGNYHHADGKGYFVQPTIFTNVTDDMTICKEEIFGPVVVILPFKTVDEVIKRANNT
TYGLAAGVWTKDISLALNVSNKLKSGSVWINEXYSIMPLIPFGAYKQSGIGRDLSEYAIQ
SYLSVKAVTIAHKTLHAQQQ*qqqsik*nnlyvnyik


Frame B:
---vvviiimpmvkvisfnqlfspmslmi*qfvkkkslvlll*fyhskllmk*lkeqitq
pmv*qlvfglkisv*h*mfqin*kvvqfglmnxiqsch*yhlvlinnlvlvvtylnmqfk
viyllkllqlliklymlnnnnnnnq*nkiicm*ii*k


Frame C:
---ww*lsscrw*rlfrstnyfhqch**ydnl*rrnlwscccnftiqnc**sn*ksk*hn
lwfsswcld*ryqfsikcfk*ikkwfsld**xlfnhaintiwcl*tiwyws*pi*icnsk
lfic*scyncs*nftcsttitttinkik*fvcklyk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG684 (SSG684Q) /CSM/SS/SSG6-D/SSG684Q.Seq.d/                        914   0.0
VSC495 (VSC495Q) /CSM/VS/VSC4-D/VSC495Q.Seq.d/                        846   0.0
VSD456 (VSD456Q) /CSM/VS/VSD4-C/VSD456Q.Seq.d/                        842   0.0
VFM553 (VFM553Q) /CSM/VF/VFM5-C/VFM553Q.Seq.d/                        842   0.0
VFM249 (VFM249Q) /CSM/VF/VFM2-C/VFM249Q.Seq.d/                        842   0.0
VFD241 (VFD241Q) /CSM/VF/VFD2-B/VFD241Q.Seq.d/                        842   0.0
VFH550 (VFH550Q) /CSM/VF/VFH5-C/VFH550Q.Seq.d/                        841   0.0
SFF427 (SFF427Q) /CSM/SF/SFF4-B/SFF427Q.Seq.d/                        811   0.0
VFA669 (VFA669Q) /CSM/VF/VFA6-C/VFA669Q.Seq.d/                        733   0.0
CFJ180 (CFJ180Q) /CSM/CF/CFJ1-D/CFJ180Q.Seq.d/                        682   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U70317|U70317.1 Dictyostelium discoideum HydA (hydA) gene, partial cds.   862   0.0    1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44   3e-12  7
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    46   6e-11  8
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    42   4e-09  10
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   8e-09  12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   2e-08  11
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42   3e-08  7
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    46   3e-08  14
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    40   5e-08  11
AC107767|AC107767.7 Mus musculus, clone RP23-148C19, complete sequence.    40   9e-08  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70317_1(U70317|pid:none) Dictyostelium discoideum HydA (hydA) g...   268   6e-71
CP000903_2567(CP000903|pid:none) Bacillus weihenstephanensis KBA...   160   2e-38
AE017194_2836(AE017194|pid:none) Bacillus cereus ATCC 10987, com...   158   5e-38
CP001283_2747(CP001283|pid:none) Bacillus cereus AH820, complete...   156   2e-37
CP001407_2748(CP001407|pid:none) Bacillus cereus 03BB102, comple...   154   7e-37
CP000485_2405(CP000485|pid:none) Bacillus thuringiensis str. Al ...   154   7e-37
(Q8MI17) RecName: Full=Retinal dehydrogenase 1;          Short=R...   152   4e-36
AB176450_1(AB176450|pid:none) Oryctolagus cuniculus aldDH mRNA f...   151   8e-36
CP001291_3666(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...   149   2e-35
AK293176_1(AK293176|pid:none) Homo sapiens cDNA FLJ51786 complet...   146   2e-34

 psg: 0.87  gvh: 0.24  alm: 0.38  top: 0.43  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSG684 is nuc

>SSG684Z.Seq
----------AGGTGGTGGTAATTATCATCATGCCGATGGTAAAGGTTATTTCGTTCAAC
CAACTATTTTCACCAATGTCACTGATGATATGACAATTTGTAAAGAAGAAATCTTTGGTC
CTGTTGTTGTAATTTTACCATTCAAAACTGTTGATGAAGTAATTAAAAGAGCAAATAACA
CAACCTATGGTTTAGCAGCTGGTGTTTGGACTAAAGATATCAGTTTAGCATTAAATGTTT
CAAATAAATTAAAAAGTGGTTCAGTTTGGATTAATGAATNTTATTCAATCATGCCATTAA
TACCATTTGGTGCTTATAAACAATCTGGTATTGGTCGTGACCTATCTGAATATGCAATTC
AAAGTTATTTATCTGTTAAAGCTGTTACAATTGCTCATAAAACTTTACATGCTCAACAAC
AATAACAACAACAATCAATAAAATAAAATAATTTGTATGTAAATTATATAAAAA