>SSG657 (SSG657Q) /CSM/SS/SSG6-C/SSG657Q.Seq.d/
XXXXXXXXXXTAAAAAGTGAATCCCAAAAAAAAAAAAAAAATTTTTAAAAAAAAACCAAA
AACAAACACCAAAAAAAAAAAAAACATAATGATGATAATATAACACTAATACACTAAAAA
AAACCCCTCAAAATACGCACGCGGTANTTTTTTTTCACAAAAAAAAAAAAAATTAAAACA
CAAATAATAATAAAATTTAAATGTAACTTTTGTTTTTTTTTTTTTAAAAAGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---ksesqkkkknf*kktknkhqkkkkhnddnitlih*KKPLKIRTRXFFFTKKKKIKTQ
IIIKFKCNFCFFFFKKKKKKKKKKKKKKKKK

Frame A:
---kk*ipkkkkkflkknqkqtpkkkkt****yntntlkktpqnthavxffhkkkkn*nt
nnnki*m*llffff*kekkkkkkkkkkkkkk


Frame B:
---ksesqkkkknf*kktknkhqkkkkhnddnitlih*KKPLKIRTRXFFFTKKKKIKTQ
IIIKFKCNFCFFFFKKKKKKKKKKKKKKKKK


Frame C:
---kvnpkkkkkifkkkpktntkkkknimmii*h*ytkknpskyargxffsqkkkklkhk
***nlnvtfvffflkrkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG657 (SSG657Q) /CSM/SS/SSG6-C/SSG657Q.Seq.d/                         94   1e-18
SSG518 (SSG518Q) /CSM/SS/SSG5-A/SSG518Q.Seq.d/                         68   7e-11
SHL517 (SHL517Q) /CSM/SH/SHL5-A/SHL517Q.Seq.d/                         46   3e-04
AHN847 (AHN847Q) /CSM/AH/AHN8-B/AHN847Q.Seq.d/                         46   3e-04
VSH386 (VSH386Q) /CSM/VS/VSH3-D/VSH386Q.Seq.d/                         44   0.001
VSG766 (VSG766Q) /CSM/VS/VSG7-C/VSG766Q.Seq.d/                         44   0.001
VSF233 (VSF233Q) /CSM/VS/VSF2-B/VSF233Q.Seq.d/                         44   0.001
VHN220 (VHN220Q) /CSM/VH/VHN2-A/VHN220Q.Seq.d/                         44   0.001
VHL739 (VHL739Q) /CSM/VH/VHL7-B/VHL739Q.Seq.d/                         44   0.001
VHG720 (VHG720Q) /CSM/VH/VHG7-A/VHG720Q.Seq.d/                         44   0.001

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ294725|AJ294725.1 Astasia longa complete chloroplast genome.     48   3e-05  2
AJ314911|AJ314911.1 Dictyostelium discoideum DrnA gene for putative RNaseIII, exons 1-3.    36   0.004  4
AC141212|AC141212.4 Rattus norvegicus clone CH230-16L9, WORKING DRAFT SEQUENCE, 40 unordered pieces.    50   0.016  1
AC134078|AC134078.2 Rattus norvegicus clone CH230-84P17, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    50   0.016  1
AP003240|AP003240.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406G08.    50   0.016  1
AC008171|AC008171.3 Homo sapiens BAC clone RP11-326D7 from 2, complete sequence.    40   0.033  2
AC140913|AC140913.13 Medicago truncatula clone mth2-26h9, WORKING DRAFT SEQUENCE, 3 ordered pieces.    40   0.034  3
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    38   0.042  5
AC079147|AC079147.5 Homo sapiens BAC clone RP11-101B5 from 2, complete sequence.    38   0.060  3
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34   0.063  6

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 104,491,684

 psg: 0.61  gvh: 0.13  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.50  mip: 0.00
 nuc: 1.26  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSG657 is nuc

>SSG657Z.Seq
----------TAAAAAGTGAATCCCAAAAAAAAAAAAAAAATTTTTAAAAAAAAACCAAA
AACAAACACCAAAAAAAAAAAAAACATAATGATGATAATATAACACTAATACACTAAAAA
AAACCCCTCAAAATACGCACGCGGTANTTTTTTTTCACAAAAAAAAAAAAAATTAAAACA
CAAATAATAATAAAATTTAAATGTAACTTTTGTTTTTTTTTTTTTAAAAAGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA