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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG643
Library SS
(Link to library)
Clone ID SSG643
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16229-1
Original site URL
Representative seq. ID SSG643E
(Link to Original site)
Representative DNA sequence 
>SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/
AAAATATAGNAAATGTCAGGTGCTTTAAAAAATTTAGTTAAATCAGTTATTAAAGTTGGT
GAAAAAGTTCCAATGGATGTTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTTGT
GCAATGGCACCAAAAGTTTTATCAGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATTC
GCTGTTCCAGGTGCTTTTACTCCAACTTGTTCAGCCAAACATTTACCAGGTTTTATTGAA
AAATCAGAAGAAATTAAAAAAAAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGAC
CCATTTGTTATGAGTGCTTGGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTT
TCAGATGGTAACTCTGAATTCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTTC
TTACTTGGTGAAGACAGATCTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAAA
CATCTTGCAGTTGAAGAAGGTGGTAAATTTGATGTATCATCTGCTGAAGCAATCTTAAAA
CAATTATAAACATAAAATCAATCTATAAATAATCAAAAANATCAAAAAAGAAAAAAAATA
AAAAAATAAAAAATATAAAATTTT
sequence update 1999. 4. 9
Translated Amino Acid sequence 
ki*XMSGALKNLVKSVIKVGEKVPMDVTLGKALPPVDGVCAMAPKVLSGELFKDRKVVLF
AVPGAFTPTCSAKHLPGFIEKSEEIKKKGISEIFCIATNDPFVMSAWGKDVNAGTAVTLL
SDGNSEFTKKIGLEMDGKAFLLGEDRSQRYAMILDSGVVKHLAVEEGGKFDVSSAEAILK
QL*t*nqsinnqkxqkrkkikk*ki*nf
Translated Amino Acid sequence (All Frames) 
Frame A:
ki*XMSGALKNLVKSVIKVGEKVPMDVTLGKALPPVDGVCAMAPKVLSGELFKDRKVVLF
AVPGAFTPTCSAKHLPGFIEKSEEIKKKGISEIFCIATNDPFVMSAWGKDVNAGTAVTLL
SDGNSEFTKKIGLEMDGKAFLLGEDRSQRYAMILDSGVVKHLAVEEGGKFDVSSAEAILK
QL*t*nqsinnqkxqkrkkikk*ki*nf


Frame B:
kyxkcqvl*ki*lnqllklvkkfqwmll*vkhshqsmvfvqwhqkfyqvnfsktvklfys
lfqvlllqlvqpniyqvllknqkklkkkvslksfvlppmthll*vlgvktlmqvlqllyf
qmvtlnslkrldlkwmvrlsylvktdlkdml*sltlvlsnilqlkkvvnlmyhllkqs*n
nykhkinl*iikxikkekk*knkkyki


Frame C:
nixnvrcfkkfs*isy*sw*kssngcyfr*stptsrwclcngtksfir*tfqrp*scfir
csrcfysnlfsqtftrfy*kirrn*kkryl*nllychq*picyeclg*rr*crycsyftf
rw*l*ih*kdwt*ngw*gfltw*rqiskicydp*lwccqtscs*rrw*i*ciic*snlkt
iiniksiyk*skxskkkknkkiknikf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/                       1078   0.0
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/                       1078   0.0
VSD185 (VSD185Q) /CSM/VS/VSD1-D/VSD185Q.Seq.d/                       1029   0.0
VHF501 (VHF501Q) /CSM/VH/VHF5-A/VHF501Q.Seq.d/                       1029   0.0
VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/                       1015   0.0
SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/                       1007   0.0
SHJ382 (SHJ382Q) /CSM/SH/SHJ3-D/SHJ382Q.Seq.d/                        999   0.0
VSH776 (VSH776Q) /CSM/VS/VSH7-D/VSH776Q.Seq.d/                        971   0.0
SSE376 (SSE376Q) /CSM/SS/SSE3-D/SSE376Q.Seq.d/                        967   0.0
VSB436 (VSB436Q) /CSM/VS/VSB4-B/VSB436Q.Seq.d/                        963   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BD283099|BD283099.1 Flea head, nerve cord, hindgut and malpighian tubule nucleic acid molecules, proteins and uses thereof.    48  2e-06  2
BF779954|BF779954.1 3254-25 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3254-25, mRNA sequence.    48  2e-06  2
AX345182|AX345182.1 Sequence 253 from Patent WO0200928.           46  0.52  1
AE001102|AE001102.1 Archaeoglobus fulgidus section 5 of 172 of the complete genome.    46  0.52  1
AC132016|AC132016.3 Rattus norvegicus clone CH230-218A13, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.52  1
BQ476340|BQ476340.1 curculio3e06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 5', mRNA sequence.    46  0.52  1
BQ476622|BQ476622.1 curculio3e06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 3', mRNA sequence.    46  0.52  1
AC013665|AC013665.4 Homo sapiens clone RP11-20E22, WORKING DRAFT SEQUENCE, 32 unordered pieces.    40  1.00  3
AC109206|AC109206.5 Mus musculus clone RP23-142F22, WORKING DRAFT SEQUENCE, 3 ordered pieces.    42  1.5  2
BX004766|BX004766.9 Zebrafish DNA sequence from clone DKEY-5P1 in linkage group 20.    46  1.6  2
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub...   140   2e-32
CP001010_161(CP001010|pid:none) Polynucleobacter necessarius sub...   139   5e-32
CP000613_3568(CP000613|pid:none) Rhodospirillum centenum SW, com...   138   1e-31
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co...   135   7e-31
AE017282_41(AE017282|pid:none) Methylococcus capsulatus str. Bat...   135   1e-30
CP000248_1994(CP000248|pid:none) Novosphingobium aromaticivorans...   134   2e-30
GN105579_1(GN105579|pid:none) Sequence 10360 from Patent WO20090...   134   3e-30
AE015451_2674(AE015451|pid:none) Pseudomonas putida KT2440 compl...   134   3e-30
BX640426_146(BX640426|pid:none) Bordetella parapertussis strain ...   133   5e-30
CP000712_3003(CP000712|pid:none) Pseudomonas putida F1, complete...   132   1e-29
protein update 2009. 7. 7
PSORT 

 psg: 0.59  gvh: 0.46  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSG643 is cyt
5' end seq. ID SSG643F
5' end seq. 
>SSG643F.Seq
AAAATATAGAAAATGTCAGGTGCTTTAAAAAATTTAGTTAAATCAGTTATTAAAGTTGGT
GAAAAAGTTCCAATGGATGTTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTTGT
GCAATGGCACCAAAAGTTTTATCAGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATTC
GCTGTTCCAGGTGCTTTTACTCCAACTTGTTCAGCCAAACATTTACCAGGTTTTATTGAA
AAATCAGAAGAAATTAAAAAAAAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGAC
CCATTTGTTATGAGTGCTTGGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTT
TCAGATGGTAACTCTGAATTCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTTC
TTACTTGGTGAAGACAGATCTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAAA
CATCTTGCAGTTGAAGAAGGTGGTAAATTTGATGTATCATCTGCTGAAGCAATCTTAAAA
CAATTATAAACATAAAATCAATCTATAAATAATCAAAAAG----------
Length of 5' end seq. 580
3' end seq. ID SSG643Z
3' end seq. 
>SSG643Z.Seq
----------GAAATGTCAGGTGCTTTAAAAAATTTAGTTAAATCAGTTATTAAAGTTGG
TGAAAAAGTTCCAATGGATGTTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTTG
TGCAATGGCACCAAAAGTTTTATCAGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATT
CGCTGTTCCAGGTGCTTTTACTCCAACTTGTTCAGCCAAACATTTACCAGGTTTTATTGA
AAAATCAGAAGAAATTAAAAAAAAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGA
CCCATTTGTTATGAGTGCTTGGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACT
TTCAGATGGTAACTCTGAATTCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTT
CTTACTTGGTGAAGACAGATCTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAA
ACATCTTGCAGTTGAAGAAGGTGGTAAATTTGATGTATCATCTGCTGAAGCAATCTTAAA
ACAATTATAAACATAAAATCAATCTATAAATAATCAAAAAAGAAAAAAAATAAAAAAATA
AAAAATATAAAATTTTAGAAAAAAGT
Length of 3' end seq. 616
Connected seq. ID SSG643P
Connected seq. 
>SSG643P.Seq
AAAATATAGAAAATGTCAGGTGCTTTAAAAAATTTAGTTAAATCAGTTATTAAAGTTGGT
GAAAAAGTTCCAATGGATGTTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTTGT
GCAATGGCACCAAAAGTTTTATCAGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATTC
GCTGTTCCAGGTGCTTTTACTCCAACTTGTTCAGCCAAACATTTACCAGGTTTTATTGAA
AAATCAGAAGAAATTAAAAAAAAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGAC
CCATTTGTTATGAGTGCTTGGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTT
TCAGATGGTAACTCTGAATTCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTTC
TTACTTGGTGAAGACAGATCTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAAA
CATCTTGCAGTTGAAGAAGGTGGTAAATTTGATGTATCATCTGCTGAAGCAATCTTAAAA
CAATTATAAACATAAAATCAATCTATAAATAATCAAAAAG----------GAAATGTCAG
GTGCTTTAAAAAATTTAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTTCCAATGGATG
TTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAAGTTT
TATCAGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTA
CTCCAACTTGTTCAGCCAAACATTTACCAGGTTTTATTGAAAAATCAGAAGAAATTAAAA
AAAAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTT
GGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAAT
TCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGAT
CTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAAACATCTTGCAGTTGAAGAAG
GTGGTAAATTTGATGTATCATCTGCTGAAGCAATCTTAAAACAATTATAAACATAAAATC
AATCTATAAATAATCAAAAAAGAAAAAAAATAAAAAAATAAAAAATATAAAATTTTAGAA
AAAAGT
Length of connected seq. 1196
Full length Seq ID SSG643E
Full length Seq. 
>SSG643E.Seq
AAAATATAGNAAATGTCAGGTGCTTTAAAAAATTTAGTTAAATCAGTTATTAAAGTTGGT
GAAAAAGTTCCAATGGATGTTACTTTAGGTAAAGCACTCCCACCAGTCGATGGTGTTTGT
GCAATGGCACCAAAAGTTTTATCAGGTGAACTTTTCAAAGACCGTAAAGTTGTTTTATTC
GCTGTTCCAGGTGCTTTTACTCCAACTTGTTCAGCCAAACATTTACCAGGTTTTATTGAA
AAATCAGAAGAAATTAAAAAAAAAGGTATCTCTGAAATCTTTTGTATTGCCACCAATGAC
CCATTTGTTATGAGTGCTTGGGGTAAAGACGTTAATGCAGGTACTGCAGTTACTTTACTT
TCAGATGGTAACTCTGAATTCACTAAAAAGATTGGACTTGAAATGGATGGTAAGGCTTTC
TTACTTGGTGAAGACAGATCTCAAAGATATGCTATGATCCTTGACTCTGGTGTTGTCAAA
CATCTTGCAGTTGAAGAAGGTGGTAAATTTGATGTATCATCTGCTGAAGCAATCTTAAAA
CAATTATAAACATAAAATCAATCTATAAATAATCAAAAANATCAAAAAAGAAAAAAAATA
AAAAAATAAAAAATATAAAATTTT
Length of full length seq. 624