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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG640
Library SS
(Link to library)
Clone ID SSG640
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16048-1
Original site URL
Representative seq. ID SSG640E
(Link to Original site)
Representative DNA sequence 
>SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/
CTTTTGGTAATGAAGGTTGTAATGGTGGTTTAATGACAAATGCATTCGAATATATTATTA
AAAATAATGGTTTAAATAGCGAAGAACAATACCCATACGAAATGAAAGTTAACGATGAAT
GTAAATTCCAAGAGGGTAGTGTTGCTGCCAAGATTACATCATATAAAGAAATTGAAGCAG
GCGATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTTGCTATTGATG
CTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGCTTGTTCTT
CTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGAAGATT
ATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATATTCATATGG
CAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCTTAAC
CATTTTTATATGTATAGATATATATATATATAAATACTCTTCAAACCTGTATAAATTTGT
ATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTANTCTTTTTTAAAAAAAAAAAAAAAAAAA
AAACAAATTATAATTAAAAAAATTTAAATAAAATTCTTATTCAATTTTCCTAAATTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 4. 9
Translated Amino Acid sequence 
FGNEGCNGGLMTNAFEYIIKNNGLNSEEQYPYEMKVNDECKFQEGSVAAKITSYKEIEAG
DENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGEDY
YIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASYPIA*pflyv*iyiyintlqtcinly
lfffffffclxffkkkkkkktnyn*knlnkiliqfs*ikkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
llvmkvvmvv**qmhsnillkimv*iaknnthtk*kltmnvnskrvvllprlhhikklkq
amktiykmlyf*iqsqlllmlliivsnftlpvftmnqlvllki*imvylllvwvlimvki
itllkivgdhhgv*mvifiwqeikitivesqqwlhilllnhfymyryiyi*ilfkpv*ic
ifffsfffsvxsflkkkkkkkqiiikki*ikflfnfpklkkkkkkkkkkkkkkkkkk


Frame B:
fw**rl*wwfndkciriyy*k*wfk*rrtipirnes*r*m*iprg*cccqdyii*rn*sr
r*krftkcftfksslscy*cfs**fptlhcrcll*tslff*rfrswctccwygy**w*rl
lhc*k*lgtimgfkwlysygkk*r*qlwnlnngfisycltificidiyiykyssnlykfv
sffflffflfxlf*kkkkkknkl*lkkfk*nsysifln*kkkkkkkkkkkkkkkkk


Frame C:
FGNEGCNGGLMTNAFEYIIKNNGLNSEEQYPYEMKVNDECKFQEGSVAAKITSYKEIEAG
DENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDNGEDY
YIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASYPIA*pflyv*iyiyintlqtcinly
lfffffffclxffkkkkkkktnyn*knlnkiliqfs*ikkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/                        963   0.0
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/                        963   0.0
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/                        963   0.0
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/                        918   0.0
SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/                        908   0.0
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/                        844   0.0
SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/                        775   0.0
SSJ459 (SSJ459Q) /CSM/SS/SSJ4-C/SSJ459Q.Seq.d/                        745   0.0
SSM561 (SSM561Q) /CSM/SS/SSM5-C/SSM561Q.Seq.d/                        741   0.0
SSA169 (SSA169Q) /CSM/SS/SSA1-C/SSA169Q.Seq.d/                        726   0.0
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    74  4e-14  2
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.    58  5e-14  3
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    46  1e-09  4
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.    58  9e-09  3
X03930|X03930.1 Dictyostelium discoideum 3'gene fragment for cysteine proteinase II.    72  1e-08  1
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    46  4e-08  6
AI067610|AI067610.1 EST209292 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCC16 5' end similar to cathepsin L, mRNA sequence.    34  8e-04  3
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    40  0.001  3
AI975022|AI975022.1 EST269616 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAA90 5' end similar to cathepsin L, mRNA sequence.    34  0.002  3
AI975620|AI975620.1 EST270214 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAV16 5' end, mRNA sequence.    34  0.002  3
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ...   214   2e-54
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   203   5e-51
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   203   5e-51
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   202   8e-51
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys...   200   3e-50
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae...   199   5e-50
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...   199   7e-50
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   199   9e-50
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   199   9e-50
BT082380_1(BT082380|pid:none) Anoplopoma fimbria clone afim-evh-...   198   2e-49
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSG640 is cyt
5' end seq. ID SSG640F
5' end seq. 
>SSG640F.Seq
CTTTTGGTAATGAAGGTTGTAATGGTGGTTTAATGACAAATGCATTCGAATATATTATTA
AAAATAATGGTTTAAATAGCGAAGAACAATACCCATACGAAATGAAAGTTAACGATGAAT
GTAAATTCCAAGAGGGTAGTGTTGCTGCCAAGATTACATCATATAAAGAAATTGAAGCAG
GCGATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTTGCTATTGATG
CTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGCTTGTTCTT
CTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGAAGATT
ATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATATTCATATGG
CAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCTTAAC
CATTTTTATATGTATAGATATATATATATATAAATACTCTTCAAACCTGTATAAATTTGT
ATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTATTCTTTTTTAAAAAAAAAA
A----------
Length of 5' end seq. 601
3' end seq. ID SSG640Z
3' end seq. 
>SSG640Z.Seq
----------ATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTAATCTTTTTTAAAAAAAAA
AAAAAAAAAAAACAAATTATAATTAAAAAAATTTAAATAAAATTCTTATTCAATTTTCCT
AAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
Length of 3' end seq. 172
Connected seq. ID SSG640P
Connected seq. 
>SSG640P.Seq
CTTTTGGTAATGAAGGTTGTAATGGTGGTTTAATGACAAATGCATTCGAATATATTATTA
AAAATAATGGTTTAAATAGCGAAGAACAATACCCATACGAAATGAAAGTTAACGATGAAT
GTAAATTCCAAGAGGGTAGTGTTGCTGCCAAGATTACATCATATAAAGAAATTGAAGCAG
GCGATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTTGCTATTGATG
CTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGCTTGTTCTT
CTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGAAGATT
ATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATATTCATATGG
CAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCTTAAC
CATTTTTATATGTATAGATATATATATATATAAATACTCTTCAAACCTGTATAAATTTGT
ATATTCTTTATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTATTCTTTTTTAAAAAAAAAA
A----------ATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTAATCTTTTTTAAAAAAAA
AAAAAAAAAAAAACAAATTATAATTAAAAAAATTTAAATAAAATTCTTATTCAATTTTCC
TAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
Length of connected seq. 773
Full length Seq ID SSG640E
Full length Seq. 
>SSG640E.Seq
CTTTTGGTAATGAAGGTTGTAATGGTGGTTTAATGACAAATGCATTCGAATATATTATTA
AAAATAATGGTTTAAATAGCGAAGAACAATACCCATACGAAATGAAAGTTAACGATGAAT
GTAAATTCCAAGAGGGTAGTGTTGCTGCCAAGATTACATCATATAAAGAAATTGAAGCAG
GCGATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTTGCTATTGATG
CTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGCTTGTTCTT
CTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGAAGATT
ATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATATTCATATGG
CAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCTTAAC
CATTTTTATATGTATAGATATATATATATATAAATACTCTTCAAACCTGTATAAATTTGT
ATCTTTTTTTTTTCTTTTTTTTTTTCTGTTTANTCTTTTTTAAAAAAAAAAAAAAAAAAA
AAACAAATTATAATTAAAAAAATTTAAATAAAATTCTTATTCAATTTTCCTAAATTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 711