SSG639
Library SS
(Link to library)
Clone ID SSG639
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15105-1
Original site URL
Representative seq. ID SSG639Z
(Link to Original site)
Representative DNA sequence
>SSG639 (SSG639Q) /CSM/SS/SSG6-B/SSG639Q.Seq.d/
XXXXXXXXXXTAAATGGTCATACTCTGGCGTTACTTGTCCAGATATCTCCTTACAAGATT
ACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCAGCAGGTAGATACAACAAAGTTA
GATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTTGCCAACAGTATGATGATGTTCG
GTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCATCGAACAAGCCTTCGAAATCA
TCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGTCGAAGCTGTCATGAACTCTG
GTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTACTGTCAGACGTCAAGCTGTCG
ATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCTCTTAACCCAAGGTACTCGTG
CTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTTAGCTGATGAATTAATCAATG
CCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAAGGATGCTTTAGAACGTACCG
CCAAATCCCATCGTTAAGCGATTCGAATATATTATATATTATTGTTTCTTTTTAAAACCC
CACAAGAAATAAACTATATAAAAAAAAAGAAAATATAAATTAAAAA
sequence update 1997.11.28
Translated Amino Acid sequence
---KWSYSGVTCPDISLQDYICVKKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFG
RNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVD
VSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTA
KSHR*airiyyillflfktpqeinyikkkki*ik


Translated Amino Acid sequence (All Frames)
Frame A:
---KWSYSGVTCPDISLQDYICVKKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFG
RNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVD
VSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGSPNSYSIKQKDALERTA
KSHR*airiyyillflfktpqeinyikkkki*ik


Frame B:
---nghtlallvqispykitsalkrmsslhiqqvdttkldserpnaqllnvlptv**csv
emlvkkswlsvssnkpskssts*pirthskf*skls*tlvhvkiqlvlvqlvlsdvklsm
fpq*dvsttlfts*pkvlvlllsetselllnv*lmn*smpqkvhqiptqsnkrml*nvpp
npivkrfeyiiyycfflkphkk*ti*kkrkyklk


Frame C:
---mvilwrylsrylltrlhlr*keclhstfsr*iqqs*iqkgpmpnc*tscqqyddvr*
kcw*kshgcpyhrtslrnhlplnr*eptpsfsrschelwst*rfnsywfswycqtsscrc
fpnetcqprclplnpryscccfqkhqncc*mfs**inqclkrftkfllnqtkgcfrtyrq
ipslsdsnilyiivsf*nptrnklykkkenin*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ269 (VSJ269Q) /CSM/VS/VSJ2-C/VSJ269Q.Seq.d/ 1207 0.0
VSH720 (VSH720Q) /CSM/VS/VSH7-A/VSH720Q.Seq.d/ 1207 0.0
VSE854 (VSE854Q) /CSM/VS/VSE8-C/VSE854Q.Seq.d/ 1207 0.0
SSG639 (SSG639Q) /CSM/SS/SSG6-B/SSG639Q.Seq.d/ 1207 0.0
FC-BS16 (FC-BS16Q) /CSM/FC/FC-BS/FC-BS16Q.Seq.d/ 1207 0.0
FC-AD21 (FC-AD21Q) /CSM/FC/FC-AD/FC-AD21Q.Seq.d/ 1207 0.0
FC-AD07 (FC-AD07Q) /CSM/FC/FC-AD/FC-AD07Q.Seq.d/ 1207 0.0
VSI164 (VSI164Q) /CSM/VS/VSI1-C/VSI164Q.Seq.d/ 1205 0.0
VSK446 (VSK446Q) /CSM/VS/VSK4-B/VSK446Q.Seq.d/ 1201 0.0
VSF223 (VSF223Q) /CSM/VS/VSF2-A/VSF223Q.Seq.d/ 1201 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AQ450188|AQ450188.1 500008H09.x1 CpIOWAM13mp18gDNA1 Cryptosporidium parvum genomicsimilar to 40S ribosomal protein S5, genomic survey sequence. 107 6e-27 3
BX538352|BX538352.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4. 107 3e-26 2
CD450618|CD450618.1 USDA-FP_102581 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-35_F01 5', mRNA sequence. 72 8e-25 4
AX489078|AX489078.1 Sequence 6378 from Patent WO02053728. 72 2e-22 3
CD421166|CD421166.1 ku80d03.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 2e-21 3
AA532240|AA532240.1 CpEST.520 uniZAPCpIOWAsporoLib3 Cryptosporidium parvum cDNA 5' similar to 40s ribosomal protein S5, mRNA sequence. 107 4e-21 2
BG301820|BG301820.1 kt05h01.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 7e-21 3
BG301832|BG301832.1 kt06a05.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 9e-21 3
BG301645|BG301645.1 kt03g01.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 9e-21 3
BI450937|BI450937.1 kt79e06.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to SW:RS5_CAEEL P49041 PROBABLE 40S RIBOSOMAL PROTEIN S5. [1] ;, mRNA sequence. 64 9e-21 3
dna update 2004. 2.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54MA6) RecName: Full=40S ribosomal protein S5; 360 2e-98
AY498744_1(AY498744|pid:none) Capsicum annuum 40S ribosomal prot... 262 5e-69
AY961565_1(AY961565|pid:none) Lysiphlebus testaceipes ribosomal ... 262 5e-69
AY961522_1(AY961522|pid:none) Lysiphlebus testaceipes ribosomal ... 262 7e-69
AK002235_1(AK002235|pid:none) Mus musculus adult male kidney cDN... 262 7e-69
(P46782) RecName: Full=40S ribosomal protein S5; &(Q5E988) RecN... 262 7e-69
AY891473_1(AY891473|pid:none) Synthetic construct Homo sapiens c... 262 7e-69
AB291558_1(AB291558|pid:none) Solea senegalensis rpS5 mRNA for r... 260 2e-68
AF402813_1(AF402813|pid:none) Ictalurus punctatus 40S ribosomal ... 260 2e-68
BT079861_1(BT079861|pid:none) Esox lucius clone eluc-evq-524-167... 260 3e-68
protein update 2009. 6.12
PSORT

psg: 0.73 gvh: 0.34 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

88.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: nuclear

>> prediction for SSG639 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG639Z
3' end seq.
>SSG639Z.Seq
----------TAAATGGTCATACTCTGGCGTTACTTGTCCAGATATCTCCTTACAAGATT
ACATCTGCGTTAAAAAGAATGTCTTCACTCCACATTCAGCAGGTAGATACAACAAAGTTA
GATTCAGAAAGGCCCAATGCCCAATTGTTGAACGTCTTGCCAACAGTATGATGATGTTCG
GTAGAAATGCTGGTAAAAAAGTCATGGCTGTCCGTATCATCGAACAAGCCTTCGAAATCA
TCTACCTCTTAACCGATAAGAACCCACTCCAAGTTTTAGTCGAAGCTGTCATGAACTCTG
GTCCACGTGAAGATTCAACTCGTATTGGTTCAGCTGGTACTGTCAGACGTCAAGCTGTCG
ATGTTTCCCCAATGAGACGTGTCAACCACGCTGTTTACCTCTTAACCCAAGGTACTCGTG
CTGCTGCTTTCAGAAACATCAGAACTGTTGCTGAATGTTTAGCTGATGAATTAATCAATG
CCTCAAAAGGTTCACCAAATTCCTACTCAATCAAACAAAAGGATGCTTTAGAACGTACCG
CCAAATCCCATCGTTAAGCGATTCGAATATATTATATATTATTGTTTCTTTTTAAAACCC
CACAAGAAATAAACTATATAAAAAAAAAGAAAATATAAATTAAAAA
Length of 3' end seq. 636
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -