>SSG632 (SSG632Q) /CSM/SS/SSG6-B/SSG632Q.Seq.d/
XXXXXXXXXXCCTCAAATGTCATCATCAAGCTCAATTAAACTTCAACCATGGAATGATGT
CATTGAATGGGGTAGATATAGTATCCCTGGAAGTCAAAATGCAATTACCAGAATGGAAGA
TAATTTAAATTTTTATTCAGGAAATTATATAGCTATTGTTGCTGTTGTACTTTTAATTAC
TTTATTCACAAATATGAATCTTTTAGTTGCAATTCTTTTATTAGGTGCAATTGGTTATTA
TTTATTCTTTGTTCAAAAAGGTGATAAAAATATTGGTTTTGCTGTTTTAACTCCAATGAT
CCAAATGGTTATTCTCGGTGTTGTATCTGTCATTGTTATATATAAATTAAGTGGTTTAAC
TTTATTCTACACAACATTAGTTTCATTACTTTTCGTTTTAGCCCACAGTGCCCTCAAAAT
GAGAAACCTTAAAAACAAAGCATCCAACTTTGTTAGTGGTATCAAAAACGATTTAAAGAA
TGAATTAAAATGAATTAAACATAAATTAAAAAATATATATAAATCTTTCAACTTCTAAAA
AAAAAATAAAA

---QMSSSSSIKLQPWNDVIEWGRYSIPGSQNAITRMEDNLNFYSGNYIAIVAVVLLITL
FTNMNLLVAILLLGAIGYYLFFVQKGDKNIGFAVLTPMIQMVILGVVSVIVIYKLSGLTL
FYTTLVSLLFVLAHSALKMRNLKNKASNFVSGIKNDLKNELK*ikhklkniyksfnf*kk
nk

Frame A:
---lkchhqaqlnfnhgmmslngvdivslevkmqlpewkii*ifiqeii*lllllyf*ll
ysqi*if*lqffy*vqlviiyslfkkvikilvllf*lq*skwlfsvlylsllyin*vv*l
ystqh*fhyfsf*ptvpsk*etlktkhptllvvskti*rmn*nelnin*kiyinlstskk
kik


Frame B:
---snviikln*tstme*ch*mg*i*ypwkskcnyqngr*fkflfrklysycccctfnyf
ihkyesfscnsfircnwllfilcskr**kywfccfnsndpngysrccichcyi*ikwfnf
ilhnisfitfrfspqcpqnekp*kqsiqlc*wyqkrfke*ikmn*t*ikkyi*ifqllkk
k*


Frame C:
---QMSSSSSIKLQPWNDVIEWGRYSIPGSQNAITRMEDNLNFYSGNYIAIVAVVLLITL
FTNMNLLVAILLLGAIGYYLFFVQKGDKNIGFAVLTPMIQMVILGVVSVIVIYKLSGLTL
FYTTLVSLLFVLAHSALKMRNLKNKASNFVSGIKNDLKNELK*ikhklkniyksfnf*kk
nk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG632 (SSG632Q) /CSM/SS/SSG6-B/SSG632Q.Seq.d/                       1043   0.0
SSK520 (SSK520Q) /CSM/SS/SSK5-A/SSK520Q.Seq.d/                         44   0.002
VFH329 (VFH329Q) /CSM/VF/VFH3-B/VFH329Q.Seq.d/                         42   0.009
CHK407 (CHK407Q) /CSM/CH/CHK4-A/CHK407Q.Seq.d/                         42   0.009
SHA874 (SHA874Q) /CSM/SH/SHA8-D/SHA874Q.Seq.d/                         38   0.14
VHJ573 (VHJ573Q) /CSM/VH/VHJ5-D/VHJ573Q.Seq.d/                         38   0.14
SSL868 (SSL868Q) /CSM/SS/SSL8-C/SSL868Q.Seq.d/                         38   0.14
SSK403 (SSK403Q) /CSM/SS/SSK4-A/SSK403Q.Seq.d/                         38   0.14
SSH227 (SSH227Q) /CSM/SS/SSH2-B/SSH227Q.Seq.d/                         38   0.14
SSG260 (SSG260Q) /CSM/SS/SSG2-C/SSG260Q.Seq.d/                         38   0.14

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    44   1e-09  16
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40   4e-09  17
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   5e-08  15
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    44   5e-08  15
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    42   1e-07  14
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.             38   3e-07  13
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           42   7e-07  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-06  16
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    34   2e-06  12
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   3e-06  12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NS7) RecName: Full=PRA1 family protein 2;                         270   2e-71
BT074743_1(BT074743|pid:none) Osmerus mordax clone omor-eva-512-...    50   4e-05
BC106485_1(BC106485|pid:none) Xenopus laevis hypothetical protei...    50   5e-05
BT045479_1(BT045479|pid:none) Salmo salar clone ssal-rgf-522-232...    49   7e-05
BT056528_1(BT056528|pid:none) Salmo salar clone ssal-eve-579-363...    49   7e-05
(Q9FRR1) RecName: Full=PRA1 family protein E;          Short=AtP...    48   2e-04
BT071828_1(BT071828|pid:none) Salmo salar clone ssal-rgf-001-078...    46   6e-04
BT079425_1(BT079425|pid:none) Esox lucius clone eluc-evq-529-325...    46   7e-04
AY054569_1(AY054569|pid:none) Arabidopsis thaliana putative prot...    44   0.004
AK223566_1(AK223566|pid:none) Homo sapiens mRNA for ADP-ribosyla...    43   0.006

 psg: 0.67  gvh: 0.55  alm: 0.21  top: 0.67  tms: 0.27  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 16.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSG632 is pla

>SSG632Z.Seq
----------CCTCAAATGTCATCATCAAGCTCAATTAAACTTCAACCATGGAATGATGT
CATTGAATGGGGTAGATATAGTATCCCTGGAAGTCAAAATGCAATTACCAGAATGGAAGA
TAATTTAAATTTTTATTCAGGAAATTATATAGCTATTGTTGCTGTTGTACTTTTAATTAC
TTTATTCACAAATATGAATCTTTTAGTTGCAATTCTTTTATTAGGTGCAATTGGTTATTA
TTTATTCTTTGTTCAAAAAGGTGATAAAAATATTGGTTTTGCTGTTTTAACTCCAATGAT
CCAAATGGTTATTCTCGGTGTTGTATCTGTCATTGTTATATATAAATTAAGTGGTTTAAC
TTTATTCTACACAACATTAGTTTCATTACTTTTCGTTTTAGCCCACAGTGCCCTCAAAAT
GAGAAACCTTAAAAACAAAGCATCCAACTTTGTTAGTGGTATCAAAAACGATTTAAAGAA
TGAATTAAAATGAATTAAACATAAATTAAAAAATATATATAAATCTTTCAACTTCTAAAA
AAAAAATAAAA