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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG610
Library SS
(Link to library)
Clone ID SSG610
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16125-1
Original site URL
Representative seq. ID SSG610Z
(Link to Original site)
Representative DNA sequence 
>SSG610 (SSG610Q) /CSM/SS/SSG6-A/SSG610Q.Seq.d/
XXXXXXXXXXTTATTATAACTTTAATGGAAATTATTCCAATGGAAATAACGGACAATCAC
AACCCCCAGGTAATAAATTTGAGGAAGATGATGAAGATGACTTTTATGATAGAGTTTATA
AGAAATCATATACAAATTGAATCATTAGTAATTCTTTTTCATATCAACAAAAACTTAATA
GTGGANNATGGAATTTCCGTAAACAGTGGAAATTTGGAAGATTAGTTTTTATTTTTTTTT
TTTGGAAATTTAATTGAAAAAAAAAAAAAAAAAAAAAATAAGATAAGATCAAAACAAAAA
AAAAAAAAACAAAAAAAAAAAAAAAACACAACAAAAAAAAAAAAAAAACAAATAAAAAAA
TAAAATTTTTGTAAATAATA
sequence update 1997.11.28
Translated Amino Acid sequence 
---IITLMEIIPMEITDNHNPQVINLRKMMKMTFMIEFIRNHIQIESLVILFHINKNLIV
XXGISVNSGNLED*flffffgnliekkkkkknkirskqkkkkqkkkknttkkkkkqikk*
nfck*
Translated Amino Acid sequence (All Frames) 
Frame A:
---yynfngnysngnngqsqppgnkfeeddeddfydrvykksytn*iisnsfsyqqklns
gxwnfrkqwkfgrlvfifffwkfn*kkkkkkk*dkiktkkkktkkkkkhnkkkkktnkki
kfl*ii


Frame B:
---IITLMEIIPMEITDNHNPQVINLRKMMKMTFMIEFIRNHIQIESLVILFHINKNLIV
XXGISVNSGNLED*flffffgnliekkkkkknkirskqkkkkqkkkknttkkkkkqikk*
nfck*


Frame C:
---l*l*wklfqwk*rtittpr**i*gr**r*ll**sl*eiiyklnh**fffistkt**w
xmefp*tveiwkisfyffflei*lkkkkkkkir*dqnkkkknkkkkktqqkkkknk*knk
ifvnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG610 (SSG610Q) /CSM/SS/SSG6-A/SSG610Q.Seq.d/                        414   e-115
SSI749 (SSI749Q) /CSM/SS/SSI7-C/SSI749Q.Seq.d/                        355   3e-97
SSF579 (SSF579Q) /CSM/SS/SSF5-D/SSF579Q.Seq.d/                        355   3e-97
SSM865 (SSM865Q) /CSM/SS/SSM8-C/SSM865Q.Seq.d/                        347   8e-95
SLB850 (SLB850Q) /CSM/SL/SLB8-C/SLB850Q.Seq.d/                        347   8e-95
SSC877 (SSC877Q) /CSM/SS/SSC8-D/SSC877Q.Seq.d/                        333   1e-90
SSI581 (SSI581Q) /CSM/SS/SSI5-D/SSI581Q.Seq.d/                        276   2e-73
CHR742 (CHR742Q) /CSM/CH/CHR7-B/CHR742Q.Seq.d/                        182   3e-45
VHM594 (VHM594Q) /CSM/VH/VHM5-D/VHM594Q.Seq.d/                         40   0.024
VHI651 (VHI651Q) /CSM/VH/VHI6-C/VHI651Q.Seq.d/                         40   0.024
own update 2002.12.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF036170|AF036170.1 Dictyostelium discoideum homeobox-containing protein Wariai mRNA, partial cds.   305   1e-91  2
AC106864|AC106864.5 Homo sapiens BAC clone RP11-148B6 from 4, complete sequence.    44   0.013  2
AZ528514|AZ528514.1 ENTCE65TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.035  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40   0.070  5
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    38   0.099  6
AP005934|AP005934.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0023E10, WORKING DRAFT SEQUENCE, 9 unordered pieces.    46   0.12   3
AC091873|AC091873.2 Homo sapiens chromosome 5 clone CTD-2577N22, complete sequence.    34   0.14   7
AC139836|AC139836.1 Homo sapiens chromosome 5 clone RP11-983N24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   0.17   7
AL109814|AL109814.1 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P11.    38   0.20   5
BF057266|BF057266.1 7k18c05.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE:3444489 3' similar to TR:Q9UIF8 Q9UIF8 BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN 2B. ;contains element MER28 repetitive element ;, mRNA sequence.    42   0.35   2
dna update 2004. 2.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036170_1(AF036170|pid:none) Dictyostelium discoideum homeobox-...    59   5e-08
CP001091_890(CP001091|pid:none) Actinobacillus pleuropneumoniae ...    36   0.36
CP000687_793(CP000687|pid:none) Actinobacillus pleuropneumoniae ...    36   0.36
CP000569_821(CP000569|pid:none) Actinobacillus pleuropneumoniae ...    35   0.62
(Q48QJ8) RecName: Full=DNA replication and repair protein recF; ...    33   3.1
(Q88BK1) RecName: Full=DNA replication and repair protein recF; ...    32   6.9
protein update 2009. 1.31
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSG610 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG610Z
3' end seq. 
>SSG610Z.Seq
----------TTATTATAACTTTAATGGAAATTATTCCAATGGAAATAACGGACAATCAC
AACCCCCAGGTAATAAATTTGAGGAAGATGATGAAGATGACTTTTATGATAGAGTTTATA
AGAAATCATATACAAATTGAATCATTAGTAATTCTTTTTCATATCAACAAAAACTTAATA
GTGGANNATGGAATTTCCGTAAACAGTGGAAATTTGGAAGATTAGTTTTTATTTTTTTTT
TTTGGAAATTTAATTGAAAAAAAAAAAAAAAAAAAAAATAAGATAAGATCAAAACAAAAA
AAAAAAAAACAAAAAAAAAAAAAAAACACAACAAAAAAAAAAAAAAAACAAATAAAAAAA
TAAAATTTTTGTAAATAATA
Length of 3' end seq. 370
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -