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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG590
Library SS
(Link to library)
Clone ID SSG590
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15363-1
Original site URL
Representative seq. ID SSG590E
(Link to Original site)
Representative DNA sequence 
>SSG590 (SSG590Q) /CSM/SS/SSG5-D/SSG590Q.Seq.d/
CTTAAGTATATTTTAAAAGATGGCCCGTACAAAACAAACCGCACGTAAATCAACTGGTGC
TAAAGTACCACGTAAACACATTGGTTCTAAACAAGCCCATAAACAAACTCCAGTCTCTTC
ATCAAGTGGTGGTGTAAAGAAAGTACATCGTTTCAGACCAGGTACTGTCGCTCTTAGAGA
AATCAGAAAATACCAAAAGAGTACCGATCTCTTAATTCGTAAACTCCCATTCCAACGTTT
AGTCAGAGAAATCGCACAAGAATTCAAAACCGATCTTCGTTTCCAATCTGCCGCCATCGG
TGCCCTTCAAGAAGCCTCTGAACTTGGTTGGTTTNTTCGAAGATNCCAATTTNTGTGCCA
TCCNCGCTAAACGNGTTACTATCATGCCAAAAGATATTCACTTAGCCAGNCGTNTCNGNG
GTGAAAGATCATAAAGNGTTTNTTTTTATTTTTTAACAAAAAAAAAAAAAAAAAAAAAAN
ACAAAACTATTCAACTCATTTGTAAATTTTCATTAATATAANAANTCCATAAAAAAAAAA
AGAAAAAAAAAAAAGAAAAAAAAAAAAAAGATTAATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
sequence update 1999. 4. 9
Translated Amino Acid sequence 
lsif*KMARTKQTARKSTGAKVPRKHIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALRE
IRKYQKSTDLLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASELGWFXRRXQFXCH
PR*txyyhakryslsqxxxx*kiikxxflffnkkkkkkkxqnysthl*ifinixxp*kkk
ekkkrkkkkrlikkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
lkyilkdgpyktnrt*inwc*stt*thwf*tsp*tnsslfikwwckestsfqtrycrs*r
nqkipkeyrslns*tpiptfsqrnrtriqnrssfpicrhrcpsrsl*twlvxskxpixvp
sxlnxllscqkift*pxvsxvkdhkxfxfif*qkkkkkkxtklfnsfvnfh*yxxsikkk
rkkkkkkkkkinkkkkkkkkkkk


Frame B:
lsif*KMARTKQTARKSTGAKVPRKHIGSKQAHKQTPVSSSSGGVKKVHRFRPGTVALRE
IRKYQKSTDLLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASELGWFXRRXQFXCH
PR*txyyhakryslsqxxxx*kiikxxflffnkkkkkkkxqnysthl*ifinixxp*kkk
ekkkrkkkkrlikkkkkkkkkkk


Frame C:
*vyfkrwpvqnkphvnqlvlkyhvntlvlnkpinklqslhqvvv*rkyivsdqvlsllek
sentkrvpis*fvnshsnv*sekshknskpifvsnlppsvpfkkplnlvgxfedxnxcai
xakrvtimpkdihlaxrxxgers*xvxfyfltkkkkkkkxktiqlickfsli*xxhkkkk
kkkkekkkkd**kkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG590 (SSG590Q) /CSM/SS/SSG5-D/SSG590Q.Seq.d/                        811   0.0
VSC276 (VSC276Q) /CSM/VS/VSC2-D/VSC276Q.Seq.d/                        781   0.0
SSM830 (SSM830Q) /CSM/SS/SSM8-B/SSM830Q.Seq.d/                        781   0.0
SSM623 (SSM623Q) /CSM/SS/SSM6-A/SSM623Q.Seq.d/                        781   0.0
SSM324 (SSM324Q) /CSM/SS/SSM3-A/SSM324Q.Seq.d/                        781   0.0
SSK765 (SSK765Q) /CSM/SS/SSK7-C/SSK765Q.Seq.d/                        781   0.0
SSF719 (SSF719Q) /CSM/SS/SSF7-A/SSF719Q.Seq.d/                        781   0.0
SSE866 (SSE866Q) /CSM/SS/SSE8-C/SSE866Q.Seq.d/                        781   0.0
CHN431 (CHN431Q) /CSM/CH/CHN4-B/CHN431Q.Seq.d/                        781   0.0
CHK456 (CHK456Q) /CSM/CH/CHK4-C/CHK456Q.Seq.d/                        781   0.0
own update 2004. 6. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U76664|U76664.1 Dictyostelium discoideum histone H3 (DdH3) mRNA, complete cds.   601  0.0  2
AF378198|AF378198.1 Rhynchosciara americana histone H1 (rah1), histone H3 (rah3), histone H4 (rah4), histone H2A (rah2a), and histone H2B (rah2b) genes, complete cds.    80  2e-23  3
BI502198|BI502198.1 kt86e11.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:H32_BOVIN P16105 HISTONE H3 ;, mRNA sequence.    86  3e-22  2
CA908372|CA908372.1 PCSC07390 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Histone H3, mRNA sequence.    68  1e-21  4
CA908369|CA908369.1 PCS04428F Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Histone H3, mRNA sequence.    68  1e-21  4
CA898692|CA898692.1 PCEP05653 Scarlet Runner Bean Embryo-Proper Region Phaseolus coccineus cDNA 5' similar to Histone H3, mRNA sequence.    68  2e-21  4
CA898689|CA898689.1 PCEP00678 Scarlet Runner Bean Embryo-Proper Region Phaseolus coccineus cDNA 5' similar to Histone H3, mRNA sequence.    68  2e-21  4
AI692138|AI692138.1 SWOv3MCAM28F02SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWOv3MCAM28F02 5', mRNA sequence.    58  5e-20  3
AW980261|AW980261.1 SWOvL2CAS06B05SK Onchocerca volvulus L2 larvae cDNA (SAW98MLW-OvL2) Onchocerca volvulus cDNA clone SWOvL2CAS06B05 5', mRNA sequence.    58  2e-19  3
CA908371|CA908371.1 PCSC06406F Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Histone H3, mRNA sequence.    60  2e-19  4
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK151451_1(AK151451|pid:none) Mus musculus bone marrow macrophag...   144   2e-43
(P84243) RecName: Full=Histone H3.3;  &(P84245) RecName: Fu &(P8...   144   2e-43
BT073617_1(BT073617|pid:none) Oncorhynchus mykiss clone omyk-evn...   144   2e-43
(Q10453) RecName: Full=Histone H3.3 type 1;  &FB335644_1(FB33564...   144   2e-43
AY533212_1(AY533212|pid:none) Chinchilla lanigera histone H3.3B ...   144   2e-43
BT073188_1(BT073188|pid:none) Oncorhynchus mykiss clone omyk-evn...   144   2e-43
AY813016_1(AY813016|pid:none) Schistosoma japonicum SJCHGC01198 ...   144   2e-43
(Q9U281) RecName: Full=Histone H3.3 type 2;  &FB335642_1(FB33564...   144   4e-43
(Q8WSF1) RecName: Full=Histone H3.3;  &AF323993_1(AF323993|pid:n...   143   4e-43
BT073831_1(BT073831|pid:none) Oncorhynchus mykiss clone omyk-evo...   143   4e-43
protein update 2009. 7. 7
PSORT 

 psg: 0.61  gvh: 0.27  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.55  mip: 0.09
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSG590 is mit
5' end seq. ID SSG590F
5' end seq. 
>SSG590F.Seq
CTTAAGTATATTTTAAAAGATGGCCCGTACAAAACAAACCGCACGTAAATCAACTGGTGC
TAAAGTACCACGTAAACACATTGGTTCTAAACAAGCCCATAAACAAACTCCAGTCTCTTC
ATCAAGTGGTGGTGTAAAGAAAGTACATCGTTTCAGACCAGGTACTGTCGCTCTTAGAGA
AATCAGAAAATACCAAAAGAGTACCGATCTCTTAATTCGTAAACTCCCATTCCAACGTTT
AGTCAGAGAAATCGCACAAGAATTCAAAACCGATCTTCGTTTCCAATCTGCCGCCATCGG
TGCCCTTCAAGAAGCCTCTGAAGCTTACTTGGTTGGTTTATTCGAAGATACCAATTTATG
TGCCATCCACGCTAAACGTGTTACTATCATGCCAAAAGATATTCACTTAGCCAGACGTAT
CAGAGGTGAAAGATCATAAAGAGTTTATTTTTATTTTTTAACAAAAAAAAAAAAAAAAAA
AAAAAACAAAACTATTCAACTCATTTGTAAATTTTCATTAATATAAT----------
Length of 5' end seq. 527
3' end seq. ID SSG590Z
3' end seq. 
>SSG590Z.Seq
----------CTTGGTTGGTTTTTTCGAAGATCCCAATTTTTGTGCCATCCCCGCTAAAC
GGGTTACTATCATGCCAAAAGATATTCACTTAGCCAGGCGTTTCGGGGGTGAAAGNTCNT
AAAGGGTTTTTTTTTATTTTTTNACANAAAAAAAAAAAAAAAAAAAAGACAAAACTATTC
AACTCATTTGTAAATTTTCATTAATATAANTCCATAAAAAAAAAAAGAAAAAAAAAAAAG
AAAAAAAAAAAAAAGATTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 289
Connected seq. ID SSG590P
Connected seq. 
>SSG590P.Seq
CTTAAGTATATTTTAAAAGATGGCCCGTACAAAACAAACCGCACGTAAATCAACTGGTGC
TAAAGTACCACGTAAACACATTGGTTCTAAACAAGCCCATAAACAAACTCCAGTCTCTTC
ATCAAGTGGTGGTGTAAAGAAAGTACATCGTTTCAGACCAGGTACTGTCGCTCTTAGAGA
AATCAGAAAATACCAAAAGAGTACCGATCTCTTAATTCGTAAACTCCCATTCCAACGTTT
AGTCAGAGAAATCGCACAAGAATTCAAAACCGATCTTCGTTTCCAATCTGCCGCCATCGG
TGCCCTTCAAGAAGCCTCTGAAGCTTACTTGGTTGGTTTATTCGAAGATACCAATTTATG
TGCCATCCACGCTAAACGTGTTACTATCATGCCAAAAGATATTCACTTAGCCAGACGTAT
CAGAGGTGAAAGATCATAAAGAGTTTATTTTTATTTTTTAACAAAAAAAAAAAAAAAAAA
AAAAAACAAAACTATTCAACTCATTTGTAAATTTTCATTAATATAAT----------CTT
GGTTGGTTTTTTCGAAGATCCCAATTTTTGTGCCATCCCCGCTAAACGGGTTACTATCAT
GCCAAAAGATATTCACTTAGCCAGGCGTTTCGGGGGTGAAAGNTCNTAAAGGGTTTTTTT
TTATTTTTTNACANAAAAAAAAAAAAAAAAAAAAGACAAAACTATTCAACTCATTTGTAA
ATTTTCATTAATATAANTCCATAAAAAAAAAAAGAAAAAAAAAAAAGAAAAAAAAAAAAA
AGATTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 816
Full length Seq ID SSG590E
Full length Seq. 
>SSG590E.Seq
CTTAAGTATATTTTAAAAGATGGCCCGTACAAAACAAACCGCACGTAAATCAACTGGTGC
TAAAGTACCACGTAAACACATTGGTTCTAAACAAGCCCATAAACAAACTCCAGTCTCTTC
ATCAAGTGGTGGTGTAAAGAAAGTACATCGTTTCAGACCAGGTACTGTCGCTCTTAGAGA
AATCAGAAAATACCAAAAGAGTACCGATCTCTTAATTCGTAAACTCCCATTCCAACGTTT
AGTCAGAGAAATCGCACAAGAATTCAAAACCGATCTTCGTTTCCAATCTGCCGCCATCGG
TGCCCTTCAAGAAGCCTCTGAACTTGGTTGGTTTNTTCGAAGATNCCAATTTNTGTGCCA
TCCNCGCTAAACGNGTTACTATCATGCCAAAAGATATTCACTTAGCCAGNCGTNTCNGNG
GTGAAAGATCATAAAGNGTTTNTTTTTATTTTTTAACAAAAAAAAAAAAAAAAAAAAAAN
ACAAAACTATTCAACTCATTTGTAAATTTTCATTAATATAANAANTCCATAAAAAAAAAA
AGAAAAAAAAAAAAGAAAAAAAAAAAAAAGATTAATAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
Length of full length seq. 610