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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG586
Library SS
(Link to library)
Clone ID SSG586
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16056-1
Original site URL
Representative seq. ID SSG586E
(Link to Original site)
Representative DNA sequence 
>SSG586 (SSG586Q) /CSM/SS/SSG5-D/SSG586Q.Seq.d/
AAATGTATATGATGTTAGATTTGCACAAACTCATGTTATACCAATTGAAGGTAAAAGTTG
GATACTTAATAATAAAACCTATACATTAACGATTGTTGGTAATAGAGATTCATTGTTATT
AGTTAAATTTATTGATATATCAATAACAGGAACATCATCAATCAAAACAGTAACAACAAA
AACAACCAAAGAAGAAATAAAAGCAACAATATTAACAAACACATATAATGTAATGGTATG
GAATAATGATATAGTAATGGGAACACGTTTATTAAATGATCCAAATCAATTACCACCAAC
AGAATCAAATGGAGAACAATATTCAAATGAACATCATAGTATAATGATACCAAAAGAATG
GGTAAAACCTGGTATGAAATTGCAATTTTTTGAAAATTCAAATATAAAGAGTTCAAAATT
TATATTTCCAAATGTTGGTCAAGATTATACATTAAAAATGTGGACATTACCATTTTATTT
ATTTGGTGCAAATGATACAAATACAAGACCATTCAATCAAACTAAAAACATTGATGATAG
TATAAGTGCTGGTTTAAGTCAAGTTTATTCATGTTCAAATATTTTATCATTAAATCATCC
AATTCAAAGGGTAGATTGGCGGCCTTATTTAGTATTAGGACCTAGAAATGGTTTACCTGG
AATGTTAATTACAAATTCAGATCAAAAAAAAGATGGTTATGCAATAATGGAAGGTGTATT
AAATATTTTAACAGGAATTAGAGTTGCATTTGGTGAATCAACATCATCAATTCAAATATA
TGCACCATTATTACATTTAGGTGCAAATGGTAAATATGCTGATACCTATGGAGGTTTAGG
GGGAAGTTCCAGAGGTACAGGAGACTATAGGTATGTAGCTCAATTGAGTTTTCTATTATA
ATAAACTCACTTTCAAATATTAAAACCAAATTAAAAAAAAATTAAAAATAAACCTAAAAT
TTAATTCTGAATCTAAAAA
sequence update 1999. 4. 9
Translated Amino Acid sequence 
NVYDVRFAQTHVIPIEGKSWILNNKTYTLTIVGNRDSLLLVKFIDISITGTSSIKTVTTK
TTKEEIKATILTNTYNVMVWNNDIVMGTRLLNDPNQLPPTESNGEQYSNEHHSIMIPKEW
VKPGMKLQFFENSNIKSSKFIFPNVGQDYTLKMWTLPFYLFGANDTNTRPFNQTKNIDDS
ISAGLSQVYSCSNILSLNHPIQRVDWRPYLVLGPRNGLPGMLITNSDQKKDGYAIMEGVL
NILTGIRVAFGESTSSIQIYAPLLHLGANGKYADTYGGLGGSSRGTGDYRYVAQLSFLL*
*thfqilkpn*kkiknkpki*f*i*k
Translated Amino Acid sequence (All Frames) 
Frame A:
kci*c*ictnscytn*r*kldt***nlyindcw**rfivis*iy*yinnrniinqnsnnk
nnqrrnksnninkhi*cngme**ysngntfik*sksittnrikwrtifk*ts*yndtkrm
gktwyeiaif*kfkykefkiyiskcwsrlyiknvditilfiwck*ykyktiqsn*kh***
ykcwfksslfmfkyfiikssnskgrlaalfsirt*kwftwnvnykfrskkrwlcnngrci
kyfnrn*sciw*iniinsnictiitfrckw*ic*ylwrfrgkfqryrrl*vcssiefsii
inslsniktklkkn*k*t*nlilnlk


Frame B:
NVYDVRFAQTHVIPIEGKSWILNNKTYTLTIVGNRDSLLLVKFIDISITGTSSIKTVTTK
TTKEEIKATILTNTYNVMVWNNDIVMGTRLLNDPNQLPPTESNGEQYSNEHHSIMIPKEW
VKPGMKLQFFENSNIKSSKFIFPNVGQDYTLKMWTLPFYLFGANDTNTRPFNQTKNIDDS
ISAGLSQVYSCSNILSLNHPIQRVDWRPYLVLGPRNGLPGMLITNSDQKKDGYAIMEGVL
NILTGIRVAFGESTSSIQIYAPLLHLGANGKYADTYGGLGGSSRGTGDYRYVAQLSFLL*
*thfqilkpn*kkiknkpki*f*i*k


Frame C:
mymmldlhklmlyqlkvkvgyliikpih*rllvieihcy*lnlliyq*qehhqskq*qqk
qpkkk*kqqy*qthim*wygimi**wehvy*miqinyhqqnqmenniqmniiv**yqkng
*nlv*ncnflkiqi*rvqnlyfqmlvkiih*kcghyhfiylvqmiqiqdhsiklktlmiv
*vlv*vkfihvqifyh*iiqfkg*iggli*y*dlemvylec*lqiqikkkmvmq*wkvy*
if*qelelhlvnqhhqfkymhhyyi*vqmvnmlipmev*gevpevqetigm*ln*vfyyn
kltfky*nqikkklkinlkfnsesk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG586 (SSG586Q) /CSM/SS/SSG5-D/SSG586Q.Seq.d/                       1322   0.0
SFE103 (SFE103Q) /CSM/SF/SFE1-A/SFE103Q.Seq.d/                        523   e-147
SHC395 (SHC395Q) /CSM/SH/SHC3-D/SHC395Q.Seq.d/                         40   0.062
SFE349 (SFE349Q) /CSM/SF/SFE3-C/SFE349Q.Seq.d/                         40   0.062
SFE149 (SFE149Q) /CSM/SF/SFE1-C/SFE149Q.Seq.d/                         40   0.062
AFL464 (AFL464Q) /CSM/AF/AFL4-C/AFL464Q.Seq.d/                         40   0.062
VFH329 (VFH329Q) /CSM/VF/VFH3-B/VFH329Q.Seq.d/                         38   0.25
SLB603 (SLB603Q) /CSM/SL/SLB6-A/SLB603Q.Seq.d/                         38   0.25
SLB263 (SLB263Q) /CSM/SL/SLB2-C/SLB263Q.Seq.d/                         38   0.25
SLA658 (SLA658Q) /CSM/SL/SLA6-C/SLA658Q.Seq.d/                         38   0.25
own update 2004. 6. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF082180|AF082180.1 Riemerella anatipestifer plasmid pCFC2, complete sequence.    44  0.011  2
AC006859|AC006859.2 Caenorhabditis elegans clone Y47D9Y, WORKING DRAFT SEQUENCE, 1 unordered pieces.    46  0.023  4
AC006781|AC006781.2 Caenorhabditis elegans clone Y47D9B, WORKING DRAFT SEQUENCE, 1 unordered pieces.    46  0.023  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32  0.069  12
AX356402|AX356402.1 Sequence 36 from Patent WO0181622.            38  0.11  3
AX345655|AX345655.1 Sequence 726 from Patent WO0200928.           38  0.11  3
AX281163|AX281163.1 Sequence 28 from Patent WO0177377.            38  0.11  3
AC144721|AC144721.7 Medicago truncatula clone mth2-11o23, WORKING DRAFT SEQUENCE, 9 unordered pieces.    46  0.66  3
Z93633|Z93633.1 Caenorhabditis elegans DNA *** SEQUENCING IN PROGRESS *** from clone.    44  0.68  3
U41536|U41536.1 Caenorhabditis elegans cosmid F56E3.    32  0.86  5
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54CP8) RecName: Full=Dictomallein-4;          EC=3.4.24.-; Fla...   319   1e-85
(Q54CP9) RecName: Full=Dictomallein-3;          EC=3.4.24.-; Fla...   315   2e-84
(Q54J86) RecName: Full=Dictomallein-1;          EC=3.4.24.-; Fla...   273   7e-72
(A3NKA8) RecName: Full=Dictomallein;          EC=3.4.24.-;  &(A3...   141   4e-32
CP000571_1773(CP000571|pid:none) Burkholderia pseudomallei 668 c...   141   4e-32
CP000545_306(CP000545|pid:none) Burkholderia mallei NCTC 10229 c...   141   4e-32
(A1UUS6) RecName: Full=Dictomallein;          EC=3.4.24.-;  &(A2...   141   4e-32
CP000011_1062(CP000011|pid:none) Burkholderia mallei ATCC 23344 ...   141   4e-32
(Q2SFU6) RecName: Full=Dictomallein-like protein;          EC=3....    62   4e-08
AE006470_117(AE006470|pid:none) Chlorobium tepidum TLS, complete...    34   6.7
protein update 2009. 3. 6
PSORT 

 psg: 0.81  gvh: 0.49  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SSG586 is nuc
5' end seq. ID SSG586F
5' end seq. 
>SSG586F.Seq
AAATGTATATGATGTTAGATTTGCACAAACTCATGTTATACCAATTGAAGGTAAAAGTTG
GATACTTAATAATAAAACCTATACATTAACGATTGTTGGTAATAGAGATTCATTGTTATT
AGTTAAATTTATTGATATATCAATAACAGGAACATCATCAATCAAAACAGTAACAACAAA
AACAACCAAAGAAGAAATAAAAGCAACAATATTAACAAACACATATAATGTAATGGTATG
GAATAATGATATAGTAATGGGAACACGTTTATTAAATGATCCAAATCAATTACCACCAAC
AGAATCAAATGGAGAACAATATTCAAATGAACATCATAGTATAATGATACCAAAAGAATG
GGTAAAACCTGGTATGAAATTGCAATTTTTTGAAAATTCAAATAGTTTTATAAAGAGTTC
AAAATTTATATTTCCAAATGTTGGTCAAGATTATACATTAAAAATGTGGACATTACCATT
TTATTTATTTGGTGCAAATGATACAAATACAAGACCATTCAATCAAACTAAAAACATTGA
TGATAGTATAAGTGCTGGTTTAAGTCAAGTTTATTCATGTTCAAATATTTTATCATTAAA
TCATCCAATTCAAAGGGTAGATTGGC----------
Length of 5' end seq. 626
3' end seq. ID SSG586Z
3' end seq. 
>SSG586Z.Seq
----------TATAAAGAGTTCAAAATTTATATTTCCAAATGTTGGTCAAGATTATACAT
TAAAAATGTGGACATTACCATTTTATTTATTTGGTGCAAATGATACAAATACAAGACCAT
TCAATCAAACTAAAAACATTGATGATAGTATAAGTGCTGGTTTAAGTCAAGTTTATTCAT
GTTCAAATATTTTATCATTAAATCATCCAATTCAAAGGGTAGATTGGCCTTATTTAGTAT
TAGGACCTAGAAATGGTTTACCTGGAATGTTAATTACAAATTCAGATCAAAAAAAAGATG
GTTATGCAATAATGGAAGGTGTATTAAATATTTTAACAGGAATTAGAGTTGCATTTGGTG
AATCAACATCATCAATTCAAATATATGCACCATTATTACATTTAGGTGCAAATGGTAAAT
ATGCTGATACCTATGGAGGTTTAGGGGGAAGTTCCAGAGGTACAGGAGACTATAGGTATG
TAGCTCAATTGAGTTTTCTATTATAATAAACTCACTTTCAAATATTAAAACCAAATTAAA
AAAAAATTAAAAATAAACCTAAAATTTAATTCTGAATCTAAAAAAAAAAAAAA
Length of 3' end seq. 583
Connected seq. ID SSG586P
Connected seq. 
>SSG586P.Seq
AAATGTATATGATGTTAGATTTGCACAAACTCATGTTATACCAATTGAAGGTAAAAGTTG
GATACTTAATAATAAAACCTATACATTAACGATTGTTGGTAATAGAGATTCATTGTTATT
AGTTAAATTTATTGATATATCAATAACAGGAACATCATCAATCAAAACAGTAACAACAAA
AACAACCAAAGAAGAAATAAAAGCAACAATATTAACAAACACATATAATGTAATGGTATG
GAATAATGATATAGTAATGGGAACACGTTTATTAAATGATCCAAATCAATTACCACCAAC
AGAATCAAATGGAGAACAATATTCAAATGAACATCATAGTATAATGATACCAAAAGAATG
GGTAAAACCTGGTATGAAATTGCAATTTTTTGAAAATTCAAATAGTTTTATAAAGAGTTC
AAAATTTATATTTCCAAATGTTGGTCAAGATTATACATTAAAAATGTGGACATTACCATT
TTATTTATTTGGTGCAAATGATACAAATACAAGACCATTCAATCAAACTAAAAACATTGA
TGATAGTATAAGTGCTGGTTTAAGTCAAGTTTATTCATGTTCAAATATTTTATCATTAAA
TCATCCAATTCAAAGGGTAGATTGGC----------TATAAAGAGTTCAAAATTTATATT
TCCAAATGTTGGTCAAGATTATACATTAAAAATGTGGACATTACCATTTTATTTATTTGG
TGCAAATGATACAAATACAAGACCATTCAATCAAACTAAAAACATTGATGATAGTATAAG
TGCTGGTTTAAGTCAAGTTTATTCATGTTCAAATATTTTATCATTAAATCATCCAATTCA
AAGGGTAGATTGGCCTTATTTAGTATTAGGACCTAGAAATGGTTTACCTGGAATGTTAAT
TACAAATTCAGATCAAAAAAAAGATGGTTATGCAATAATGGAAGGTGTATTAAATATTTT
AACAGGAATTAGAGTTGCATTTGGTGAATCAACATCATCAATTCAAATATATGCACCATT
ATTACATTTAGGTGCAAATGGTAAATATGCTGATACCTATGGAGGTTTAGGGGGAAGTTC
CAGAGGTACAGGAGACTATAGGTATGTAGCTCAATTGAGTTTTCTATTATAATAAACTCA
CTTTCAAATATTAAAACCAAATTAAAAAAAAATTAAAAATAAACCTAAAATTTAATTCTG
AATCTAAAAAAAAAAAAAA
Length of connected seq. 1209
Full length Seq ID SSG586E
Full length Seq. 
>SSG586E.Seq
AAATGTATATGATGTTAGATTTGCACAAACTCATGTTATACCAATTGAAGGTAAAAGTTG
GATACTTAATAATAAAACCTATACATTAACGATTGTTGGTAATAGAGATTCATTGTTATT
AGTTAAATTTATTGATATATCAATAACAGGAACATCATCAATCAAAACAGTAACAACAAA
AACAACCAAAGAAGAAATAAAAGCAACAATATTAACAAACACATATAATGTAATGGTATG
GAATAATGATATAGTAATGGGAACACGTTTATTAAATGATCCAAATCAATTACCACCAAC
AGAATCAAATGGAGAACAATATTCAAATGAACATCATAGTATAATGATACCAAAAGAATG
GGTAAAACCTGGTATGAAATTGCAATTTTTTGAAAATTCAAATATAAAGAGTTCAAAATT
TATATTTCCAAATGTTGGTCAAGATTATACATTAAAAATGTGGACATTACCATTTTATTT
ATTTGGTGCAAATGATACAAATACAAGACCATTCAATCAAACTAAAAACATTGATGATAG
TATAAGTGCTGGTTTAAGTCAAGTTTATTCATGTTCAAATATTTTATCATTAAATCATCC
AATTCAAAGGGTAGATTGGCGGCCTTATTTAGTATTAGGACCTAGAAATGGTTTACCTGG
AATGTTAATTACAAATTCAGATCAAAAAAAAGATGGTTATGCAATAATGGAAGGTGTATT
AAATATTTTAACAGGAATTAGAGTTGCATTTGGTGAATCAACATCATCAATTCAAATATA
TGCACCATTATTACATTTAGGTGCAAATGGTAAATATGCTGATACCTATGGAGGTTTAGG
GGGAAGTTCCAGAGGTACAGGAGACTATAGGTATGTAGCTCAATTGAGTTTTCTATTATA
ATAAACTCACTTTCAAATATTAAAACCAAATTAAAAAAAAATTAAAAATAAACCTAAAAT
TTAATTCTGAATCTAAAAA
Length of full length seq. 979