>SSG579 (SSG579Q) /CSM/SS/SSG5-D/SSG579Q.Seq.d/
XXXXXXXXXXCAAATAAAATTAAAAAAACTATAATTATTAATTTAAAAAAAATAATAAAA
AAAAAAATGTTTAAAAAATTACTTTTCTTTACTTTAACTTTTGCTCTCTTTGCTTTAGCA
ATTTGTGATAATTCAATTAAAATCACTCAAACATTAAGTAGTGCTTGGGAAGGACATTCA
ACATGGAATGTAGTAATAGAAAACATTGGAGATAAACCTATCTTTGGTGCTACCATCGTT
GCCGAATCTGGTTTAAGCCTCGAAAGACCAGATAATCTTTGGTCATTAGATTCATTAGGT
AATAATAGATTTGGTCTCCCATCTTGGATTACTCAAAATGGTGGTCTTAAAGCTTTCAAT
GGTACTCATACATTTGGTTACACTAATGCTCAACCAACTTCAGCAGTATTCTCAGCCACT
GATATTAGATATTAAATAAACCAAAAAAAACACTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

---NKIKKTIIINLKKIIKKKMFKKLLFFTLTFALFALAICDNSIKITQTLSSAWEGHST
WNVVIENIGDKPIFGATIVAESGLSLERPDNLWSLDSLGNNRFGLPSWITQNGGLKAFNG
THTFGYTNAQPTSAVFSATDIRY*inqkkh*kkkkkkkkkkkk

Frame A:
---k*n*knyny*fkknnkkknv*kitflyfnfcslcfsnl**fn*nhsnik*clgrtfn
mecsnrkhwr*tylwcyhrcriwfkprktr*slvirfir***iwspildyskwws*sfqw
ysyiwlh*cstnfssilsh*y*ilnkpkktlkkkkkkkkkkkk


Frame B:
---NKIKKTIIINLKKIIKKKMFKKLLFFTLTFALFALAICDNSIKITQTLSSAWEGHST
WNVVIENIGDKPIFGATIVAESGLSLERPDNLWSLDSLGNNRFGLPSWITQNGGLKAFNG
THTFGYTNAQPTSAVFSATDIRY*inqkkh*kkkkkkkkkkkk


Frame C:
---iklkkl*lli*kk**kkkclknyfsll*lllsll*qfviiqlkslkh*vvlgkdiqh
gm***ktleinlslvlpslpnlv*askdqiifgh*ih*viidlvshlgllkmvvlklsmv
lihlvtlmlnqlqqysqplildik*tkkntkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM627 (SSM627Q) /CSM/SS/SSM6-B/SSM627Q.Seq.d/                        722   0.0
SSJ675 (SSJ675Q) /CSM/SS/SSJ6-D/SSJ675Q.Seq.d/                        722   0.0
SSG579 (SSG579Q) /CSM/SS/SSG5-D/SSG579Q.Seq.d/                        722   0.0
SSE756 (SSE756Q) /CSM/SS/SSE7-C/SSE756Q.Seq.d/                        722   0.0
CHS326 (CHS326Q) /CSM/CH/CHS3-B/CHS326Q.Seq.d/                        722   0.0
SSC222 (SSC222Q) /CSM/SS/SSC2-A/SSC222Q.Seq.d/                        702   0.0
SSG168 (SSG168Q) /CSM/SS/SSG1-C/SSG168Q.Seq.d/                        686   0.0
SSC746 (SSC746Q) /CSM/SS/SSC7-B/SSC746Q.Seq.d/                        676   0.0
SSF357 (SSF357Q) /CSM/SS/SSF3-C/SSF357Q.Seq.d/                        658   0.0
SSG613 (SSG613Q) /CSM/SS/SSG6-A/SSG613Q.Seq.d/                        648   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC122256|AC122256.3 Mus musculus BAC clone RP23-178H7 from 7, complete sequence.    46   0.040  2
AC111541|AC111541.4 Rattus norvegicus clone CH230-159J13, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44   0.21   2
AC112789|AC112789.3 Mus musculus chromosome UNK clone RP23-151J21, WORKING DRAFT SEQUENCE, 55 unordered pieces.    46   0.46   1
AL928819|AL928819.6 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-73M3.    46   0.46   1
AC115012|AC115012.4 Mus musculus clone RP24-192J5, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46   0.46   1
BE346553|BE346553.1 sp27a08.y1 Gm-c1042 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1042-1743 5' similar to SW:RBS1_SOYBN P00865 RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 PRECURSOR ;, mRNA sequence.    32   1.2    2
AC096790|AC096790.6 Rattus norvegicus clone CH230-6M14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44   1.8    1
AC116460|AC116460.10 Mus musculus chromosome 10, clone RP23-244G12, complete sequence.    36   3.2    5
AC105768|AC105768.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1122_B08, *** SEQUENCING IN PROGRESS ***, 8 ordered pieces.    36   3.5    5
AP005697|AP005697.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0005C03.    36   3.5    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_44(AC116956|pid:none) Dictyostelium discoideum chromoso...    81   1e-14
A68688_1(A68688|pid:none) Sequence 2 from Patent WO9801569.  &AF...    44   0.002
AJ299386_1(AJ299386|pid:none) Heterodera schachtii partial mRNA ...    42   0.006
AF056110_1(AF056110|pid:none) Globodera rostochiensis beta-1,4-e...    37   0.25
AF004523_1(AF004523|pid:none) Globodera rostochiensis beta-1,4-e...    37   0.25
EU176871_1(EU176871|pid:none) Pratylenchus coffeae GHF5 endogluc...    37   0.32
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    35   0.72
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    35   0.94
EF693940_1(EF693940|pid:none) Radopholus similis GHF5 endo-1,4-b...    35   1.2
AP009153_1221(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN...    34   2.1

 psg: 0.66  gvh: 0.75  alm: 0.26  top: 0.00  tms: 0.07  mit: 0.35  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSG579 is cyt

>SSG579Z.Seq
----------CAAATAAAATTAAAAAAACTATAATTATTAATTTAAAAAAAATAATAAAA
AAAAAAATGTTTAAAAAATTACTTTTCTTTACTTTAACTTTTGCTCTCTTTGCTTTAGCA
ATTTGTGATAATTCAATTAAAATCACTCAAACATTAAGTAGTGCTTGGGAAGGACATTCA
ACATGGAATGTAGTAATAGAAAACATTGGAGATAAACCTATCTTTGGTGCTACCATCGTT
GCCGAATCTGGTTTAAGCCTCGAAAGACCAGATAATCTTTGGTCATTAGATTCATTAGGT
AATAATAGATTTGGTCTCCCATCTTGGATTACTCAAAATGGTGGTCTTAAAGCTTTCAAT
GGTACTCATACATTTGGTTACACTAATGCTCAACCAACTTCAGCAGTATTCTCAGCCACT
GATATTAGATATTAAATAAACCAAAAAAAACACTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA