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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG561
Library SS
(Link to library)
Clone ID SSG561
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15517-1
Original site URL
Representative seq. ID SSG561E
(Link to Original site)
Representative DNA sequence 
>SSG561 (SSG561Q) /CSM/SS/SSG5-C/SSG561Q.Seq.d/
AAAAGAAGAAGATGAAAAATTGCGTAGTTTGGTGGATTTACATGGTACCAAAAGATGGAA
TTATATTGCATCATTGTTATGTTTACGTAATGGTAGACAGTGTAGAGAGAGATGGTCCAA
TCAATTGGACTCATCCATTAAAAGAGATGCTTGGACCTTGGAGGAAGATAGAATCATCTT
GGATGCTCACTCTAAATATGGTAATAAATGGGCTGAAATCTCTAAACTCTTGCCGGGTAG
AACTAATTGCGCCATTAAAAATCATTGGAACTCCACTATGAAAAGAAAATTAAGTAAAAA
ACAATATGACTTCTCATCGTTGCCACCAATCTCTTCCTCCATTGTAAGTGATAATTCCTC
ATCTTTGTCAACTCCAACTGATTCAATTTCATCTTCACCTTCAACTTCACCAATTACTTT
AAGTAGTAATGTAGTTGTAAATGATTTTGATTCACACAACAACAACAACAAACTTATCAA
CAACCACCACCACAATCACAAGATAGTGGCAATAATCAATTCAATTTTAATAATAATAAT
AATNATAATAATAATAATAATTAATAATAATAATAATAGTGTTGAGTCCATTAAATTATA
TACAAATTAAACTAAAAACAAGTCATTTTTTTAACGTTATTAGCGCCAAATCATCAAATT
AAAATAAACCCTATTTATTATAAACAACTTTCAA
sequence update 1999. 4. 9
Translated Amino Acid sequence 
KEEDEKLRSLVDLHGTKRWNYIASLLCLRNGRQCRERWSNQLDSSIKRDAWTLEEDRIIL
DAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSKKQYDFSSLPPISSSIVSDNSS
SLSTPTDSISSSPSTSPITLSSNVVVNDFDSHNNNNKLINNHHHNHKIVAIINSILIIII
XIIIIIINNNNNSVESIKLYTN*tknksff*ry*rqiiklk*tlfiinnfq
Translated Amino Acid sequence (All Frames) 
Frame A:
krrr*kia*fggftwyqkmelyciivmft*w*tv*remvqsiglih*krcldlggr*nhl
gcsl*iw**mg*nl*tlag*n*lrh*kslelhyekkik*kti*llivatnlflhck**fl
ifvnsn*fnfiftfnftnyfk**csck*f*ftqqqqqtyqqpppqsqdsgnnqfnfnnnn
nxnnnnn******c*vh*iiykln*kqvifltllapnhqikinpiyykqls


Frame B:
KEEDEKLRSLVDLHGTKRWNYIASLLCLRNGRQCRERWSNQLDSSIKRDAWTLEEDRIIL
DAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSKKQYDFSSLPPISSSIVSDNSS
SLSTPTDSISSSPSTSPITLSSNVVVNDFDSHNNNNKLINNHHHNHKIVAIINSILIIII
XIIIIIINNNNNSVESIKLYTN*tknksff*ry*rqiiklk*tlfiinnfq


Frame C:
kkkmkncvvwwiymvpkdgiilhhcyvyvmvdsverdgpinwthplkemlgpwrkiessw
mltlnmvinglkslnscrveliaplkiigtpl*ken*vknnmtshrchqslppl*viiph
lcqlqliqfhlhlqlhqll*vvm*l*milihtttttnlstttttitr*wq*siqf*****
x*****liiiiivlsplnyiqiklktshffnvisakssn*nkpyll*ttf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG561 (SSG561Q) /CSM/SS/SSG5-C/SSG561Q.Seq.d/                        894   0.0
SSL493 (SSL493Q) /CSM/SS/SSL4-D/SSL493Q.Seq.d/                        196   3e-49
SLF608 (SLF608Q) /CSM/SL/SLF6-A/SLF608Q.Seq.d/                        188   8e-47
SHJ859 (SHJ859Q) /CSM/SH/SHJ8-C/SHJ859Q.Seq.d/                        137   3e-31
FC-AJ23 (FC-AJ23Q) /CSM/FC/FC-AJ/FC-AJ23Q.Seq.d/                       46   7e-04
CHP786 (CHP786Q) /CSM/CH/CHP7-D/CHP786Q.Seq.d/                         42   0.011
SHJ737 (SHJ737Q) /CSM/SH/SHJ7-B/SHJ737Q.Seq.d/                         40   0.044
SFH289 (SFH289Q) /CSM/SF/SFH2-D/SFH289Q.Seq.d/                         40   0.044
SFC645 (SFC645Q) /CSM/SF/SFC6-B/SFC645Q.Seq.d/                         40   0.044
CHD631 (CHD631Q) /CSM/CH/CHD6-B/CHD631Q.Seq.d/                         40   0.044
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Z11534|Z11534.1 D.discoideum DNA for Myb DNA-Binding domain.      58  2e-04  1
BU875887|BU875887.1 V012F11 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    40  0.002  2
AF236059|AF236059.1 Papaver rhoeas putative Myb-related domain (pmr) mRNA, partial cds.    50  0.038  1
AC091314|AC091314.3 Mus musculus clone RP23-57B2, WORKING DRAFT SEQUENCE, 17 unordered pieces.    40  0.045  2
CB239452|CB239452.1 RSH11G02 two-month-old roots from clone 'Beaupre' grown for 19 days under restricted irrigation Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA 5', mRNA sequence.    38  0.14  2
AX755616|AX755616.1 Sequence 317 from Patent WO03000905.          32  0.17  4
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    38  0.25  6
AC027699|AC027699.3 Homo sapiens clone RP11-814H16, WORKING DRAFT SEQUENCE, 17 unordered pieces.    46  0.59  1
CD817922|CD817922.1 BN20.043K23F011127 BN20 Brassica napus cDNA clone BN20043K23, mRNA sequence.    42  0.59  2
CC948429|CC948429.1 BOIGX80TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIGX80, genomic survey sequence.    42  0.60  2
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(B0G0Y5) RecName: Full=Myb-like protein AA;                           218   1e-55
U96090_1(U96090|pid:none) Strongylocentrotus purpuratus myb-rela...   135   2e-30
AB114037_1(AB114037|pid:none) Oryzias latipes c-myb mRNA for tra...   134   3e-30
BC096006_1(BC096006|pid:none) Xenopus tropicalis v-myb myeloblas...   133   6e-30
TVMSMB(A25285;A23939;A93630;I59075;I53245;S07545;I49626) transfo...   132   8e-30
AJ606318_1(AJ606318|pid:none) Homo sapiens mRNA for v-myb myelob...   132   8e-30
M13138_2(M13138|pid:none) Mouse c-myb mRNA with Cas-BR-M viral g...   132   8e-30
TVHUMB(A26661;A41952;S11197;I59517;I80450;I58400;S08492)transfor...   132   8e-30
D26148_1(D26148|pid:none) Bos taurus mRNA for protooncogene c-my...   132   8e-30
S11198(S11198) transforming protein myb (clone Mbm-2) - human (f...   132   8e-30
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.07  top: 0.27  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.38  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: nuclear
	 20.0 %: vesicles of secretory system
	 16.0 %: cytoplasmic
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSG561 is nuc
5' end seq. ID SSG561F
5' end seq. 
>SSG561F.Seq
AAAAGAAGAAGATGAAAAATTGCGTAGTTTGGTGGATTTACATGGTACCAAAAGATGGAA
TTATATTGCATCATTGTTATGTTTACGTAATGGTAGACAGTGTAGAGAGAGATGGTCCAA
TCAATTGGACTCATCCATTAAAAGAGATGCTTGGACCTTGGAGGAAGATAGAATCATCTT
GGATGCTCACTCTAAATATGGTAATAAATGGGCTGAAATCTCTAAACTCTTGCCGGGTAG
AACTAATTGCGCCATTAAAAATCATTGGAACTCCACTATGAAAAGAAAATTAAGTAAAAA
ACAATATGACTTCTCATCGTTGCCACCAATCTCTTCCTCCATTGTAAGTGATAATTCCTC
ATCTTTGTCAACTCCAACTGATTCAATTTCATCTTCACCTTCAACTTCACCAATTACTTT
AAGTAGTAATGTAGTTGTAAATGATTTTGATTCACAACAACAACAACAACAACAACAAAC
TTATCAACAACCACCACCACAATCACAAGATAGTGGCAATAATCAATTCAATTTTAATAA
TAATAATAATAATAATAATAATAATAAT----------
Length of 5' end seq. 568
3' end seq. ID SSG561Z
3' end seq. 
>SSG561Z.Seq
----------CAACAACAACAACAAACTTATCAACAACCACCACCACAATCACAAGATAG
TGGCAATAATCAATTCAATTTTAATAATAATNANNATTATAATAATAATAATAATAATAA
TAATAATAATAGTGTTGAGTCCATTAAATTATATACAAATTAAACTAAAAACAAGTCATT
TTTTTAACGTTATTAGCGCCAAATCATCAAATTAAAATAAACCCTATTTATTATAAACAA
CTTTCAAGAAG
Length of 3' end seq. 241
Connected seq. ID SSG561P
Connected seq. 
>SSG561P.Seq
AAAAGAAGAAGATGAAAAATTGCGTAGTTTGGTGGATTTACATGGTACCAAAAGATGGAA
TTATATTGCATCATTGTTATGTTTACGTAATGGTAGACAGTGTAGAGAGAGATGGTCCAA
TCAATTGGACTCATCCATTAAAAGAGATGCTTGGACCTTGGAGGAAGATAGAATCATCTT
GGATGCTCACTCTAAATATGGTAATAAATGGGCTGAAATCTCTAAACTCTTGCCGGGTAG
AACTAATTGCGCCATTAAAAATCATTGGAACTCCACTATGAAAAGAAAATTAAGTAAAAA
ACAATATGACTTCTCATCGTTGCCACCAATCTCTTCCTCCATTGTAAGTGATAATTCCTC
ATCTTTGTCAACTCCAACTGATTCAATTTCATCTTCACCTTCAACTTCACCAATTACTTT
AAGTAGTAATGTAGTTGTAAATGATTTTGATTCACAACAACAACAACAACAACAACAAAC
TTATCAACAACCACCACCACAATCACAAGATAGTGGCAATAATCAATTCAATTTTAATAA
TAATAATAATAATAATAATAATAATAAT----------CAACAACAACAACAAACTTATC
AACAACCACCACCACAATCACAAGATAGTGGCAATAATCAATTCAATTTTAATAATAATN
ANNATTATAATAATAATAATAATAATAATAATAATAATAGTGTTGAGTCCATTAAATTAT
ATACAAATTAAACTAAAAACAAGTCATTTTTTTAACGTTATTAGCGCCAAATCATCAAAT
TAAAATAAACCCTATTTATTATAAACAACTTTCAAGAAG
Length of connected seq. 809
Full length Seq ID SSG561E
Full length Seq. 
>SSG561E.Seq
AAAAGAAGAAGATGAAAAATTGCGTAGTTTGGTGGATTTACATGGTACCAAAAGATGGAA
TTATATTGCATCATTGTTATGTTTACGTAATGGTAGACAGTGTAGAGAGAGATGGTCCAA
TCAATTGGACTCATCCATTAAAAGAGATGCTTGGACCTTGGAGGAAGATAGAATCATCTT
GGATGCTCACTCTAAATATGGTAATAAATGGGCTGAAATCTCTAAACTCTTGCCGGGTAG
AACTAATTGCGCCATTAAAAATCATTGGAACTCCACTATGAAAAGAAAATTAAGTAAAAA
ACAATATGACTTCTCATCGTTGCCACCAATCTCTTCCTCCATTGTAAGTGATAATTCCTC
ATCTTTGTCAACTCCAACTGATTCAATTTCATCTTCACCTTCAACTTCACCAATTACTTT
AAGTAGTAATGTAGTTGTAAATGATTTTGATTCACACAACAACAACAACAAACTTATCAA
CAACCACCACCACAATCACAAGATAGTGGCAATAATCAATTCAATTTTAATAATAATAAT
AATNATAATAATAATAATAATTAATAATAATAATAATAGTGTTGAGTCCATTAAATTATA
TACAAATTAAACTAAAAACAAGTCATTTTTTTAACGTTATTAGCGCCAAATCATCAAATT
AAAATAAACCCTATTTATTATAAACAACTTTCAA
Length of full length seq. 694