SSG558
Library SS
(Link to library)
Clone ID SSG558
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSG558Z
(Link to Original site)
Representative DNA sequence
>SSG558 (SSG558Q) /CSM/SS/SSG5-C/SSG558Q.Seq.d/
XXXXXXXXXXAAACAACCAATAGAAAAAAAAAAGTTAAAGATGTAATGGTAAAACCAAAG
TAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATAATCAATGTATAGATAT
TGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTAAAT
CTATATTGTAATTTTTCTAAAAAAAAAAAAAAGAAAAAAAAAAACAAAAAAAAAAAGAAA
AAATTAAAAATAATAATAATAATAATAATAATAATACAATAAATTTAAATAAAAATAAAG
AATAAACCTTATAGTGGGTTTACCAATTTAAAAAAACA
sequence update 1997.11.23
Translated Amino Acid sequence
---ttnrkkkvkdvmvkpk*ngnpkkdlyklpl*SMYRYCSVCVYAVRSSLLFSYFNLNL
YCNFSKKKKKKKKNKKKKKKLKIIIIIIIIIQ*i*ikiknkpysgftnlkk


Translated Amino Acid sequence (All Frames)
Frame A:
---nnq*kkks*rcngktkvewkskkrsl*iatiinv*ilfrlcvcc*vqfal*ll*fks
il*ff*kkkkekkkqkkkekiknnnnnnnnntinlnknke*tl*wvyqfkkt


Frame B:
---ttnrkkkvkdvmvkpk*ngnpkkdlyklpl*SMYRYCSVCVYAVRSSLLFSYFNLNL
YCNFSKKKKKKKKNKKKKKKLKIIIIIIIIIQ*i*ikiknkpysgftnlkk


Frame C:
---qpiekkklkm*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*iy
iviflkkkkrkkktkkkrkn*k********ynkfk*k*rinlivglpi*kn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG558 (SSG558Q) /CSM/SS/SSG5-C/SSG558Q.Seq.d/ 285 2e-76
SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/ 281 3e-75
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/ 281 3e-75
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/ 281 3e-75
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/ 281 3e-75
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/ 281 3e-75
SSM515 (SSM515Q) /CSM/SS/SSM5-A/SSM515Q.Seq.d/ 281 3e-75
SSM501 (SSM501Q) /CSM/SS/SSM5-A/SSM501Q.Seq.d/ 281 3e-75
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/ 281 3e-75
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/ 281 3e-75

own update 2004. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16417|D16417.1 Dictyostelium discoideum mRNA. 228 2e-74 2
AC023423|AC023423.5 Homo sapiens clone RP11-430C23, complete sequence. 44 1.2 1
AL627250|AL627250.8 Human DNA sequence from clone RP13-222H17 on chromosome X Contains a novel pseudogene. 44 1.2 1
AC122904|AC122904.2 Mus musculus chromosome 1 clone RP23-46H15, complete sequence. 44 1.2 1
AC112773|AC112773.3 Homo sapiens chromosome 3 clone RP11-637N15, WORKING DRAFT SEQUENCE, 21 unordered pieces. 42 4.9 1
AC129804|AC129804.2 Homo sapiens clone RP11-637N16, WORKING DRAFT SEQUENCE, 7 unordered pieces. 42 4.9 1
AC121679|AC121679.4 Rattus norvegicus clone CH230-438M13, WORKING DRAFT SEQUENCE, 2 unordered pieces. 42 4.9 1
AC102662|AC102662.2 Mus musculus clone RP23-144N11, WORKING DRAFT SEQUENCE, 6 unordered pieces. 42 4.9 1
AC128298|AC128298.2 Rattus norvegicus clone CH230-399F9, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 42 4.9 1
AL772217|AL772217.10 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP23-160K5. 42 4.9 1
dna update 2004. 2.12
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 305,629,460
protein update 2009. 6.12
PSORT

psg: 0.89 gvh: 0.44 alm: 0.40 top: 0.47 tms: 0.00 mit: 0.55 mip: 0.00
nuc: 0.59 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
8.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for SSG558 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG558Z
3' end seq.
>SSG558Z.Seq
----------AAACAACCAATAGAAAAAAAAAAGTTAAAGATGTAATGGTAAAACCAAAG
TAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATAATCAATGTATAGATAT
TGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTAAAT
CTATATTGTAATTTTTCTAAAAAAAAAAAAAAGAAAAAAAAAAACAAAAAAAAAAAGAAA
AAATTAAAAATAATAATAATAATAATAATAATAATACAATAAATTTAAATAAAAATAAAG
AATAAACCTTATAGTGGGTTTACCAATTTAAAAAAACA
Length of 3' end seq. 328
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -