AFB356
Library AF
(Link to library)
Clone ID AFB356
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16263-1
Original site URL
Representative seq. ID AFB356Z
(Link to Original site)
Representative DNA sequence
>AFB356 (AFB356Q) /CSM/AF/AFB3-C/AFB356Q.Seq.d/
XXXXXXXXXXAGGTACTAGCAAACTTGGTAAAGCTGNNGGNCGTTGATCAAGTTAGAGGT
ATCCTCGAAGTTNACTCTACCTATCGTAATTTCTTCTCTGATGGTGTCAACAACGAGAAA
TCATTGGAAGACTCATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTTTTGAAGAT
CAATATGGTTATGGTGTCTTTTACGCTTACATTAAATTAAGAGAACAAGAAATTAGAAAT
ATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAACAAAAAATGAATCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---VLANLVKLXXVDQVRGILEVXSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMAFEDQ
YGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMN


Translated Amino Acid sequence (All Frames)
Frame A:
---gtsklgkaxgr*ss*ryprsxlyls*fll*wcqqreiigrlil*t*sslksygf*rs
iwlwcllrlh*ikrtrn*kysldc*my*skyetknes


Frame B:
---VLANLVKLXXVDQVRGILEVXSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMAFEDQ
YGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMN


Frame C:
---y*qtw*sxxxliklevsskxtlpivisslmvsttrnhwkthslnmkft*ivwllkin
mvmvsftltln*enkklei*fgllnvlvki*nkk*i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFB356 (AFB356Q) /CSM/AF/AFB3-C/AFB356Q.Seq.d/ 537 e-152
VSE491 (VSE491Q) /CSM/VS/VSE4-D/VSE491Q.Seq.d/ 521 e-147
VSA730 (VSA730Q) /CSM/VS/VSA7-B/VSA730Q.Seq.d/ 521 e-147
VSA185 (VSA185Q) /CSM/VS/VSA1-D/VSA185Q.Seq.d/ 521 e-147
VFM556 (VFM556Q) /CSM/VF/VFM5-C/VFM556Q.Seq.d/ 521 e-147
SSM519 (SSM519Q) /CSM/SS/SSM5-A/SSM519Q.Seq.d/ 521 e-147
SSK753 (SSK753Q) /CSM/SS/SSK7-C/SSK753Q.Seq.d/ 521 e-147
SSK721 (SSK721Q) /CSM/SS/SSK7-A/SSK721Q.Seq.d/ 521 e-147
SSK423 (SSK423Q) /CSM/SS/SSK4-A/SSK423Q.Seq.d/ 521 e-147
SSI366 (SSI366Q) /CSM/SS/SSI3-C/SSI366Q.Seq.d/ 521 e-147

own update 2004. 8.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U13150|U13150.1 Dictyostelium discoideum vacuolar ATPase subunit DVA41 mRNA, complete cds. 494 e-144 2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 494 e-141 2
BE029219|BE029219.1 kp26d05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:VATX_BOVIN P12953 VACUOLAR ATP SYNTHASE SUBUNIT AC39 ;, mRNA sequence. 76 1e-14 2
AI067312|AI067312.1 EST208990 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS44 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence. 54 7e-05 2
AI067329|AI067329.1 EST209007 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNAS63 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence. 54 9e-05 2
AI067953|AI067953.1 EST209642 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCH20 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence. 54 1e-04 2
AI067936|AI067936.1 EST209624 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCG92 5' end similar to ATPase vacuolar, 40 kDa subunit, mRNA sequence. 54 1e-04 2
BU776849|BU776849.1 SJEDDD08 SJE Schistosoma japonicum cDNA, mRNA sequence. 54 0.001 1
BU768904|BU768904.1 SJEBZB10 SJE Schistosoma japonicum cDNA, mRNA sequence. 54 0.001 1
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 44 0.053 4
dna update 2003. 7.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A55016(A55016) lysosomal membrane protein DVA41 - slime mold (Di... 172 4e-42
(P54641) RecName: Full=V-type proton ATPase subunit d; ... 172 4e-42
(Q5ZHL0) RecName: Full=V-type proton ATPase subunit d 2; ... 98 7e-20
BC125665_1(BC125665|pid:none) Xenopus tropicalis ATPase, H+ tran... 97 2e-19
BC042233_1(BC042233|pid:none) Xenopus laevis ATPase, H+ transpor... 97 2e-19
AY648766_1(AY648766|pid:none) Danio rerio v-ATPase AC39 subunit ... 96 3e-19
(P51863) RecName: Full=V-type proton ATPase subunit d 1; ... 96 4e-19
(P61420) RecName: Full=V-type proton ATPase subunit d 1; ... 96 4e-19
A32123(A32123)H+-exporting ATPase (EC 3.6.3.6) polypeptide IV, v... 96 4e-19
AK300570_1(AK300570|pid:none) Homo sapiens cDNA FLJ54755 complet... 96 4e-19
protein update 2009. 3.27
PSORT

psg: 0.57 gvh: 0.52 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for AFB356 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFB356Z
3' end seq.
>AFB356Z.Seq
----------AGGTACTAGCAAACTTGGTAAAGCTGNNGGNCGTTGATCAAGTTAGAGGT
ATCCTCGAAGTTNACTCTACCTATCGTAATTTCTTCTCTGATGGTGTCAACAACGAGAAA
TCATTGGAAGACTCATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTTTTGAAGAT
CAATATGGTTATGGTGTCTTTTACGCTTACATTAAATTAAGAGAACAAGAAATTAGAAAT
ATAGTTTGGATTGCTGAATGTATTAGTCAAAATATGAAACAAAAAATGAATCA
Length of 3' end seq. 283
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -