>SSG551 (SSG551Q) /CSM/SS/SSG5-C/SSG551Q.Seq.d/
XXXXXXXXXXTTTAATAAAAGGTGAAGAACCTAAACCATTCCGTAGATTCTTTGAAATTT
GTAAATGCGTGGCCCTCAAATTAACTCAAATCACTTTTACTCTTCCAGTTGAAAAACAAA
CTTTATTAAATCAAATTTTAGATTGTAATATGTCTAAAGAAGATTTTAAACATAATATTG
AATTATTCTTAAAAGATGGTTTCGTATTCAATGTAAATTTAATTTCCCAAGAAAGAACTG
AAGAAGTTAAAACCCTTGTAAAATATATTTTAGATTTAAGAAAGGAAGAGATCGCTGCTC
AATCTCGTATTGCTAAAATCACCATCGAAAGTGGTGGTAAAAAGAATTTATCCATGGGTG
CTCCACCACCAACTCATGCTGCCACTCCAGATCTAATGGTAACTTTAGTCATTCCACCAG
AGAATGAACCAATCCCAGAGATTATAAAAATTCAAAATGAATTACATAAAATTAGACTCG
ATATCGAAGAACACAGAATGAATATTTTCAATATTCAAATTAGAGATCATGTTGAAGTTT
TAAAACAAAGATATCCAGAAAAATAATAATCTTTTTTTAATAATATAATTTTTTTTTTTA
AAATAATAATAATAATAATTTCAAATTTTAATTAAAGAAATAGAGG

---LIKGEEPKPFRRFFEICKCVALKLTQITFTLPVEKQTLLNQILDCNMSKEDFKHNIE
LFLKDGFVFNVNLISQERTEEVKTLVKYILDLRKEEIAAQSRIAKITIESGGKKNLSMGA
PPPTHAATPDLMVTLVIPPENEPIPEIIKIQNELHKIRLDIEEHRMNIFNIQIRDHVEVL
KQRYPEK**sffnniifffkiiiiiisnfn*rnr

Frame A:
---LIKGEEPKPFRRFFEICKCVALKLTQITFTLPVEKQTLLNQILDCNMSKEDFKHNIE
LFLKDGFVFNVNLISQERTEEVKTLVKYILDLRKEEIAAQSRIAKITIESGGKKNLSMGA
PPPTHAATPDLMVTLVIPPENEPIPEIIKIQNELHKIRLDIEEHRMNIFNIQIRDHVEVL
KQRYPEK**sffnniifffkiiiiiisnfn*rnr


Frame B:
---**kvknlnhsvdslkfvnawpsn*lkslllfqlknkly*ikf*iviclkkilniiln
ys*kmvsysm*i*fpkkelkklkpl*nif*i*erkrsllnlvllkspskvvvkriypwvl
hhqlmlplqi*w*l*sfhqrmnqsqrl*kfkmnyikldsisknte*ifsifkleimlkf*
nkdiqknnnlflii*ffflk*****fqilikeie


Frame C:
---nkr*rt*tip*il*nl*mrgpqinsnhfysss*ktnfiksnfrl*yv*rrf*t*y*i
ilkrwfriqckfnfprkn*rs*npckiyfrfkkgrdrcsisyc*nhhrkww*kefihgcs
ttnscchsrsngnfshstre*tnprdyknsk*it*n*tryrrtqneyfqysn*rsc*sfk
tkisrkiiiff**ynfff*nnnnnnfkf*lkk*r

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG551 (SSG551Q) /CSM/SS/SSG5-C/SSG551Q.Seq.d/                       1146   0.0
SSF390 (SSF390Q) /CSM/SS/SSF3-D/SSF390Q.Seq.d/                       1146   0.0
SSK663 (SSK663Q) /CSM/SS/SSK6-C/SSK663Q.Seq.d/                       1106   0.0
SSM305 (SSM305Q) /CSM/SS/SSM3-A/SSM305Q.Seq.d/                       1088   0.0
SSJ142 (SSJ142Q) /CSM/SS/SSJ1-B/SSJ142Q.Seq.d/                       1011   0.0
SSE214 (SSE214Q) /CSM/SS/SSE2-A/SSE214Q.Seq.d/                        995   0.0
SSD372 (SSD372Q) /CSM/SS/SSD3-C/SSD372Q.Seq.d/                        985   0.0
SSM150 (SSM150Q) /CSM/SS/SSM1-C/SSM150Q.Seq.d/                        950   0.0
SSE128 (SSE128Q) /CSM/SS/SSE1-B/SSE128Q.Seq.d/                        948   0.0
SSA509 (SSA509Q) /CSM/SS/SSA5-A/SSA509Q.Seq.d/                        944   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF080677|AF080677.1 Dictyostelium discoideum developmental protein PhdA (phdA) gene, complete cds.   767   0.0    2
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    34   1e-06  15
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    34   4e-06  15
AC116952|AC116952.2 Mus musculus chromosome UNK clone RP23-104A7, WORKING DRAFT SEQUENCE, 66 unordered pieces.    48   3e-05  9
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.    32   4e-05  9
AE015941|AE015941.1 Clostridium tetani E88, section 6 of 10 of the complete genome.    42   5e-05  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   6e-05  17
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    42   8e-05  13
AL365201|AL365201.14 Human DNA sequence from clone RP11-39C22 on chromosome 9.    34   1e-04  9
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    34   1e-04  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF165818_142(AF165818|pid:none) Guillardia theta nucleomorph chr...    34   4.1
CP001096_836(CP001096|pid:none) Rhodopseudomonas palustris TIE-1...    33   5.3
CP000381_587(CP000381|pid:none) Neisseria meningitidis 053442, c...    33   5.3
CP001322_3216(CP001322|pid:none) Desulfatibacillum alkenivorans ...    33   5.3
AE004969_216(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, c...    33   5.3
BT077848_1(BT077848|pid:none) Lepeophtheirus salmonis clone lsal...    33   9.0

 psg: 0.60  gvh: 0.47  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSG551 is cyt

>SSG551Z.Seq
----------TTTAATAAAAGGTGAAGAACCTAAACCATTCCGTAGATTCTTTGAAATTT
GTAAATGCGTGGCCCTCAAATTAACTCAAATCACTTTTACTCTTCCAGTTGAAAAACAAA
CTTTATTAAATCAAATTTTAGATTGTAATATGTCTAAAGAAGATTTTAAACATAATATTG
AATTATTCTTAAAAGATGGTTTCGTATTCAATGTAAATTTAATTTCCCAAGAAAGAACTG
AAGAAGTTAAAACCCTTGTAAAATATATTTTAGATTTAAGAAAGGAAGAGATCGCTGCTC
AATCTCGTATTGCTAAAATCACCATCGAAAGTGGTGGTAAAAAGAATTTATCCATGGGTG
CTCCACCACCAACTCATGCTGCCACTCCAGATCTAATGGTAACTTTAGTCATTCCACCAG
AGAATGAACCAATCCCAGAGATTATAAAAATTCAAAATGAATTACATAAAATTAGACTCG
ATATCGAAGAACACAGAATGAATATTTTCAATATTCAAATTAGAGATCATGTTGAAGTTT
TAAAACAAAGATATCCAGAAAAATAATAATCTTTTTTTAATAATATAATTTTTTTTTTTA
AAATAATAATAATAATAATTTCAAATTTTAATTAAAGAAATAGAGG