SSG529
Library SS
(Link to library)
Clone ID SSG529
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSG529Z
(Link to Original site)
Representative DNA sequence
>SSG529 (SSG529Q) /CSM/SS/SSG5-B/SSG529Q.Seq.d/
XXXXXXXXXXGCCTCAAAAATTCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGT
TGTTTTACTCGCTCAAAATCAAGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAA
ATCCTCATTCGTTTCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTAC
TTTCAACAAACAAGTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGC
CAGCCAACAAGGTAGTGGATCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTT
CACTTATGTTACTGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCAT
TTTATTCACTGGTATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCCCC
AAAGAGCAAAGTACTTTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATA
AAACAAATAAAATATGACATATAATAAAAAATAAAAAATAAACAAAAAAAAAAAAAAAAA
AAAGATTAATAAAAAAA
sequence update 1997.11.23
Translated Amino Acid sequence
---SKIQPTLSNKVVDIVVVLLAQNQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATF
NKQVEQSFLQDGSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAIL
FTGICCISDLQVPDRYEAPKSKVL*kkknnkklipnnl*nk*nmtynkk*kinkkkkkkk
inkk


Translated Amino Acid sequence (All Frames)
Frame A:
---pqkfnqpyqtkllis*lfyslkiktqpsnnsnlllknphsflsllllllmnlmfkll
stnklnnhfykmvhhh*iqpankvvdqvvqdqmnqlnnislmllvqsflli*lsqsy*pf
yslvfvvfliskfqidtkpqrakyfkkkkiikn*yqiiyktnki*hiiknkk*tkkkkkk
rlikk


Frame B:
---lknstnlikqsc*yrscftrsksrlnhqtipicc*kilirfflyccfcs*i*cssyf
qqts*tiiftrwfiiikfsqptr*wik*frik*tn*ttfhlcywsspfclfdylnlishf
ihwyllyf*spssr*irspkeqstlkkkk**kintk*fikqikydi**kiknkqkkkkkk
d**k


Frame C:
---SKIQPTLSNKVVDIVVVLLAQNQDSTIKQFQSVVEKSSFVSFFTAASAHEFDVQATF
NKQVEQSFLQDGSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAIL
FTGICCISDLQVPDRYEAPKSKVL*kkknnkklipnnl*nk*nmtynkk*kinkkkkkkk
inkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSG529 (SSG529Q) /CSM/SS/SSG5-B/SSG529Q.Seq.d/ 846 0.0
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/ 831 0.0
SSL653 (SSL653Q) /CSM/SS/SSL6-C/SSL653Q.Seq.d/ 831 0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/ 831 0.0
SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/ 831 0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/ 831 0.0
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/ 831 0.0
SSK290 (SSK290Q) /CSM/SS/SSK2-D/SSK290Q.Seq.d/ 831 0.0
SSI588 (SSI588Q) /CSM/SS/SSI5-D/SSI588Q.Seq.d/ 831 0.0
SSG822 (SSG822Q) /CSM/SS/SSG8-A/SSG822Q.Seq.d/ 831 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 498 0.0 4
AC113655|AC113655.4 Rattus norvegicus clone CH230-307E9, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces. 40 0.075 2
AC118188|AC118188.5 Rattus norvegicus clone CH230-208M20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces. 40 0.11 2
AC124921|AC124921.3 Rattus norvegicus clone CH230-214L24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 40 0.22 6
AC115411|AC115411.4 Rattus norvegicus clone CH230-207J17, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 46 0.53 1
AC123184|AC123184.4 Rattus norvegicus clone CH230-246F14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 46 0.53 1
AC111943|AC111943.4 Rattus norvegicus clone CH230-207F15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 46 0.53 1
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 46 0.53 1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence. 46 0.53 1
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence. 46 0.53 1
dna update 2004. 2.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso... 149 5e-35
AE004091_3663(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 32 8.4

protein update 2009. 1.30
PSORT

psg: 0.86 gvh: 0.54 alm: 0.14 top: 0.50 tms: 0.07 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.05 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vacuolar

>> prediction for SSG529 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG529Z
3' end seq.
>SSG529Z.Seq
----------GCCTCAAAAATTCAACCAACCTTATCAAACAAAGTTGTTGATATCGTAGT
TGTTTTACTCGCTCAAAATCAAGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAA
ATCCTCATTCGTTTCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTAC
TTTCAACAAACAAGTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGC
CAGCCAACAAGGTAGTGGATCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTT
CACTTATGTTACTGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCAT
TTTATTCACTGGTATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCCCC
AAAGAGCAAAGTACTTTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATA
AAACAAATAAAATATGACATATAATAAAAAATAAAAAATAAACAAAAAAAAAAAAAAAAA
AAAGATTAATAAAAAAA
Length of 3' end seq. 547
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -