>SSG525 (SSG525Q) /CSM/SS/SSG5-B/SSG525Q.Seq.d/
ACCACTTTCAACTTTTATGGATTTCATTTCATATGGTTATATGATTGATAACGTCGTTTT
ATTAATCACTGGTACTCTCCACGAAAGAGATATCTCTGAATTGGTCGATAAATGTCACCC
ATTAGGTTTATTCAAGTCAATGGCCACTCTCTCTGTCGTTCATAATGTCGCTGACCTTTA
TAATAATGTTTTAATTGATACACCATTAGCACCATACATTCAAGGTTGTTTATCAGAAGA
AGATTTAGATGAAATGAATATTGAAATTATTAGAAATACTTTATATAAAGCTTATTTAGA
AGATTTTTACAACTATTGCAAATATCTCGGTGGTCAAACTGAATTGATCATGAGTGATAT
TTTAAAGTTTGAAGCAGATCGTAGATCAATCAATATCACAATCAATAGTTTTGGTGCAAC
TGAACTCTCAAAGGATGATCGTGAAAAACTTTACCCATCCTTAGGTCTTTTATACCCAGA
AGGTACTAGCAAACTTGGTAAAGCTGAAGACGTTGATCAAGTTAGAGGTATCCTCGAAGT
TTACTCTACCTATCGTAATTTCTTCTCTGATGGTGTCAACAACGAGAAATCATTGGAAGA
CTCATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTTXXXXXXXXXX

PLSTFMDFISYGYMIDNVVLLITGTLHERDISELVDKCHPLGLFKSMATLSVVHNVADLY
NNVLIDTPLAPYIQGCLSEEDLDEMNIEIIRNTLYKAYLEDFYNYCKYLGGQTELIMSDI
LKFEADRRSINITINSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEV
YSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMA---

Frame A:
ttfnfygfhfiwlyd**rrfinhwysprkryl*igr*mspirfiqvnghslcrs*cr*pl
**cfn*ytistihsrlfirrrfr*ney*ny*kyfi*slfrrflqllqisrwsn*idhe*y
fkv*srs*inqyhnq*fwcn*tlkg*s*ktlpilrsfiprry*qtw*s*rr*ss*ryprs
llyls*fll*wcqqreiigrlil*t*sslksyg---


Frame B:
PLSTFMDFISYGYMIDNVVLLITGTLHERDISELVDKCHPLGLFKSMATLSVVHNVADLY
NNVLIDTPLAPYIQGCLSEEDLDEMNIEIIRNTLYKAYLEDFYNYCKYLGGQTELIMSDI
LKFEADRRSINITINSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEV
YSTYRNFFSDGVNNEKSLEDSFFEHEVHLNRMA---


Frame C:
hfqllwisfhmvi*litsfy*slvlstkeislnwsinvth*vyssqwplslsfimsltfi
imf*lihh*hhtfkvvyqkki*mk*ilklleilyikli*kifttianisvvkln*s*vif
*slkqivdqsisqsivlvqlnsqrmivknfthp*vfytqkvlanlvklktliklevsskf
tlpivisslmvsttrnhwkthslnmkft*ivw---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN487 (VFN487Q) /CSM/VF/VFN4-D/VFN487Q.Seq.d/                       1271   0.0
VFL533 (VFL533Q) /CSM/VF/VFL5-B/VFL533Q.Seq.d/                       1271   0.0
VFI861 (VFI861Q) /CSM/VF/VFI8-C/VFI861Q.Seq.d/                       1271   0.0
VFG596 (VFG596Q) /CSM/VF/VFG5-D/VFG596Q.Seq.d/                       1271   0.0
VFF564 (VFF564Q) /CSM/VF/VFF5-C/VFF564Q.Seq.d/                       1271   0.0
VFE465 (VFE465Q) /CSM/VF/VFE4-C/VFE465Q.Seq.d/                       1271   0.0
VFE167 (VFE167Q) /CSM/VF/VFE1-C/VFE167Q.Seq.d/                       1271   0.0
VFC648 (VFC648Q) /CSM/VF/VFC6-B/VFC648Q.Seq.d/                       1271   0.0
SSG525 (SSG525Q) /CSM/SS/SSG5-B/SSG525Q.Seq.d/                       1271   0.0
CFJ470 (CFJ470Q) /CSM/CF/CFJ4-C/CFJ470Q.Seq.d/                       1271   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U13150|U13150.1 Dictyostelium discoideum vacuolar ATPase subunit DVA41 mRNA, complete cds.  1247   0.0    1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   862   0.0    13
BI742459|BI742459.1 kt51b11.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q9W4P5 Q9W4P5 CG2934 PROTEIN. ;, mRNA sequence.   100   3e-23  3
BE580863|BE580863.1 kp82d12.y2 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    92   3e-21  4
CB098495|CB098495.1 ku54c04.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q9W4P5 Q9W4P5 CG2934 PROTEIN. ;, mRNA sequence.    92   7e-21  3
BE580116|BE580116.1 kq37d03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    86   3e-16  2
BE223572|BE223572.1 kp82d12.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:Q25531 Q25531 40-KDA V-ATPASE SUBUNIT. ;, mRNA sequence.    84   1e-15  2
BI508631|BI508631.1 BB170008B10B05 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170008B10B05 5', mRNA sequence.    86   3e-15  2
BI506652|BI506652.1 BB170020B20A07 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170020B20A07 5', mRNA sequence.    86   3e-15  2
BI507500|BI507500.1 BB170014A10F04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170014A10F04 5', mRNA sequence.    86   3e-15  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54641) RecName: Full=V-type proton ATPase subunit d;          ...   429   e-119
A55016(A55016) lysosomal membrane protein DVA41 - slime mold (Di...   427   e-118
EF676791_1(EF676791|pid:none) Picea sitchensis clone WS02752_K08...   275   8e-73
(Q9W4P5) RecName: Full=V-type proton ATPase subunit d 1;        ...   275   8e-73
AC006611_1(AC006611|pid:none) Caenorhabditis elegans cosmid C30F...   272   7e-72
BC042233_1(BC042233|pid:none) Xenopus laevis ATPase, H+ transpor...   271   9e-72
(Q9LHA4) RecName: Full=Probable V-type proton ATPase subunit d 2...   271   1e-71
DQ443281_1(DQ443281|pid:none) Bombyx mori H+ transporting ATPase...   270   3e-71
BC125665_1(BC125665|pid:none) Xenopus tropicalis ATPase, H+ tran...   270   3e-71
DQ440373_1(DQ440373|pid:none) Aedes aegypti clone AET-492 vacuol...   269   4e-71

 psg: 0.75  gvh: 0.40  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSG525 is cyt

>SSG525F.Seq
ACCACTTTCAACTTTTATGGATTTCATTTCATATGGTTATATGATTGATAACGTCGTTTT
ATTAATCACTGGTACTCTCCACGAAAGAGATATCTCTGAATTGGTCGATAAATGTCACCC
ATTAGGTTTATTCAAGTCAATGGCCACTCTCTCTGTCGTTCATAATGTCGCTGACCTTTA
TAATAATGTTTTAATTGATACACCATTAGCACCATACATTCAAGGTTGTTTATCAGAAGA
AGATTTAGATGAAATGAATATTGAAATTATTAGAAATACTTTATATAAAGCTTATTTAGA
AGATTTTTACAACTATTGCAAATATCTCGGTGGTCAAACTGAATTGATCATGAGTGATAT
TTTAAAGTTTGAAGCAGATCGTAGATCAATCAATATCACAATCAATAGTTTTGGTGCAAC
TGAACTCTCAAAGGATGATCGTGAAAAACTTTACCCATCCTTAGGTCTTTTATACCCAGA
AGGTACTAGCAAACTTGGTAAAGCTGAAGACGTTGATCAAGTTAGAGGTATCCTCGAAGT
TTACTCTACCTATCGTAATTTCTTCTCTGATGGTGTCAACAACGAGAAATCATTGGAAGA
CTCATTCTTTGAACATGAAGTTCACTTAAATCGTATGGCTT----------