>SSG522 (SSG522Q) /CSM/SS/SSG5-A/SSG522Q.Seq.d/
XXXXXXXXXXTTACCCTTTTTTCCAAAAACACAAAAAAAAAAAAAAAAAAAAATTAAATA
GGAAAAGTAAGAATAGTAATAGTACCTTAAAAATAAAAAAAAATAAAATAGAAAAAAATA
ATATAATAAAAATTATAAAAAGCAATAAAAAAAAAAAAAATAAAAAAAAAAATAATCAAA
ATAAAATAATAATAAAATAAAA

---YPFFQKHKKKKKKKLNRKSKNSNSTLKIKKNKIEKNNIIKIIKSNKKKKNKKKNNQN
KIIIK*

Frame A:
---YPFFQKHKKKKKKKLNRKSKNSNSTLKIKKNKIEKNNIIKIIKSNKKKKNKKKNNQN
KIIIK*


Frame B:
---tlfskntkkkkkkn*igkvrivivp*k*kkik*kkii**kl*kaikkkkikkkiiki
k***nk


Frame C:
---pffpktqkkkkkkik*ek*e***ylknkkk*nrkk*ynknykkq*kkkk*kkk*sk*
nnnkik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG522 (SSG522Q) /CSM/SS/SSG5-A/SSG522Q.Seq.d/                         68   5e-11
SSK560 (SSK560Q) /CSM/SS/SSK5-C/SSK560Q.Seq.d/                         62   3e-09
SSI449 (SSI449Q) /CSM/SS/SSI4-C/SSI449Q.Seq.d/                         62   3e-09
SSF713 (SSF713Q) /CSM/SS/SSF7-A/SSF713Q.Seq.d/                         62   3e-09
SSF524 (SSF524Q) /CSM/SS/SSF5-A/SSF524Q.Seq.d/                         62   3e-09
AHC603 (AHC603Q) /CSM/AH/AHC6-A/AHC603Q.Seq.d/                         36   0.19
VSE850 (VSE850Q) /CSM/VS/VSE8-C/VSE850Q.Seq.d/                         32   2.9
VSB585 (VSB585Q) /CSM/VS/VSB5-D/VSB585Q.Seq.d/                         32   2.9
VHA469 (VHA469Q) /CSM/VH/VHA4-C/VHA469Q.Seq.d/                         32   2.9
SSL626 (SSL626Q) /CSM/SS/SSL6-B/SSL626Q.Seq.d/                         32   2.9

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC129731|AC129731.5 Rattus norvegicus clone CH230-36K19, WORKING DRAFT SEQUENCE.    42   2.8    1
AC111021|AC111021.2 Mus musculus clone RP23-89C23, WORKING DRAFT SEQUENCE, 17 unordered pieces.    42   2.8    1
AC141745|AC141745.1 Apis mellifera clone CH224-58F6, WORKING DRAFT SEQUENCE, 17 unordered pieces.    42   2.8    1
AC110113|AC110113.4 Rattus norvegicus clone CH230-303G1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42   2.8    1
AC108551|AC108551.6 Rattus norvegicus clone CH230-153N19, WORKING DRAFT SEQUENCE, 1 ordered piece.    42   2.8    1
AC145303|AC145303.2 Mus musculus chromosome UNK clone RP23-411P20, WORKING DRAFT SEQUENCE, 14 unordered pieces.    42   2.8    1
AF408405|AF408405.1 Lactobacillus salivarius subsp. salivarius bacteriocin-like prepeptides, Abp118 alpha (abp118alpha), Abp118 beta (abp118beta), AbpIM (abpIM), AbpIP (abpIP), AbpK (abpK), AbpR (abpR), AbpT (abpT), and AbpD (abpD) genes, complete cds; and unknown genes.    30   4.3    3
BQ897067|BQ897067.1 AGENCOURT_7981122 Lupski_dorsal_root_ganglion Homo sapiens cDNA clone IMAGE:6185365 5', mRNA sequence.    36   6.3    2
AZ904391|AZ904391.1 RPCI-24-221G2.TV RPCI-24 Mus musculus genomic clone RPCI-24-221G2, DNA sequence.    32   7.3    2
AL133217|AL133217.5 Human DNA sequence from clone RP11-672F9 on chromosome 10.    40   11     1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 32,503,666

 psg: 0.25  gvh: -0.04  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.68  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSG522 is nuc

>SSG522Z.Seq
----------TTACCCTTTTTTCCAAAAACACAAAAAAAAAAAAAAAAAAAAATTAAATA
GGAAAAGTAAGAATAGTAATAGTACCTTAAAAATAAAAAAAAATAAAATAGAAAAAAATA
ATATAATAAAAATTATAAAAAGCAATAAAAAAAAAAAAAATAAAAAAAAAAATAATCAAA
ATAAAATAATAATAAAATAAAA