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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG496
Library SS
(Link to library)
Clone ID SSG496
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15745-1
Original site URL
Representative seq. ID SSG496E
(Link to Original site)
Representative DNA sequence 
>SSG496 (SSG496Q) /CSM/SS/SSG4-D/SSG496Q.Seq.d/
ATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTGCTTACGACGAAGCTTAGC
TGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAGGTAAAAACAAAATCGTCTT
ATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAGAAATCAACCAACCATCTGA
ACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATGAATCAAAACGTTCAAAATT
CGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTGCCAAAGCTAATGTCTCTGT
CCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTGTTGAAGTCCACCGTCGCNG
NTGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGTAAATCAAGTGGTGCTGATTACT
CTGGTANCAAATCAACCNACTAAACGTTNCNCGCATCTAAAAATGTNTACATNTTTTAAA
AAAAAAAAAATTNAAAACAAAACAAAAAAAAAAAAAAAAAAGTGTATCAATTATAATAGT
AATAATAAATAATAATAATAGATAATNTTTTAAAAATATACACAAATTATATATTATACA
TATTTTTAAACAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 4. 9
Translated Amino Acid sequence 
FHNGRCFLHRIKSCLRRSLADSNDTNWCLFKYEGKNKIVLSGKGSGGFAELAQEINQPSE
RLYAYLRVVSGDDESKRSKFVFISWCGEEVGPLAKANVSVHKASVKQVIKNIGVEVHRRX
*sq*rrindqss*ikwc*llwxqinxlnvxri*kcxhxlkkkkxktkqkkkkksvsiiiv
iinnnnr*xfknihklyiihifkqkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
isqwpmfppqn*kllttkls*fk*yqlvfiqirr*kqnrlir*r*rwfc*isprnqpti*
tficilksciw***iktfkirfhlmvw*rswspcqs*clcpqsfsqtshqkhwc*sppsx
xismkkn**pkfvnqvvlitlvxnqptkrxxhlkmxtxfkkkkixnktkkkkkkcinyns
nnk****ixf*kytqiiyytyf*tkkkkkekkkkkk


Frame B:
FHNGRCFLHRIKSCLRRSLADSNDTNWCLFKYEGKNKIVLSGKGSGGFAELAQEINQPSE
RLYAYLRVVSGDDESKRSKFVFISWCGEEVGPLAKANVSVHKASVKQVIKNIGVEVHRRX
*sq*rrindqss*ikwc*llwxqinxlnvxri*kcxhxlkkkkxktkqkkkkksvsiiiv
iinnnnr*xfknihklyiihifkqkkkkkkkkkkk


Frame C:
ftmadvsstelkaaydea*liqmiptgvysntkvktkssypvkvavvlln*pkkstnhln
vymht*elylvmmnqnvqnsfsshgvvkklvplpklmslstklqsnkssktlvlkstvax
dlneeelmtkvrkssgadysgxkstx*txxasknvyxf*kkknxkqnkkkkkkvyql***
**iiiidnxlkiytnyilyiflnkkkkkrkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG496 (SSG496Q) /CSM/SS/SSG4-D/SSG496Q.Seq.d/                        898   0.0
SSA612 (SSA612Q) /CSM/SS/SSA6-A/SSA612Q.Seq.d/                        868   0.0
VSK407 (VSK407Q) /CSM/VS/VSK4-A/VSK407Q.Seq.d/                        854   0.0
VSH509 (VSH509Q) /CSM/VS/VSH5-A/VSH509Q.Seq.d/                        854   0.0
VSD863 (VSD863Q) /CSM/VS/VSD8-C/VSD863Q.Seq.d/                        854   0.0
VSA452 (VSA452Q) /CSM/VS/VSA4-C/VSA452Q.Seq.d/                        854   0.0
VFE866 (VFE866Q) /CSM/VF/VFE8-C/VFE866Q.Seq.d/                        854   0.0
SSM221 (SSM221Q) /CSM/SS/SSM2-A/SSM221Q.Seq.d/                        854   0.0
SSL733 (SSL733Q) /CSM/SS/SSL7-B/SSL733Q.Seq.d/                        854   0.0
SSI114 (SSI114Q) /CSM/SS/SSI1-A/SSI114Q.Seq.d/                        854   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M92992|M92992.1 Dictyostelium discoideum cyclic AMP-regulated protein (p16) mRNA, complete cds.   589  0.0  3
X61797|X61797.1 Dictyostelium discoideum mRNA for p17, purified from actin-myosin  complex.   589  0.0  3
CC594013|CC594013.1 CH240_395P7.T7 CHORI-240 Bos taurus genomic clone CH240_395P7, genomic survey sequence.    46  0.55  1
U40160|U40160.1 Caenorhabditis elegans cosmid C56E10.    36  1.1  2
AJ013038|AJ013038.1 Entamoeba histolytica EST EhEST330.           44  2.2  1
AP004491|AP004491.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjT17G08, TM0023.    40  4.2  3
AJ277892|AJ277892.2 Homo sapiens partial TTN gene for titin.      42  8.5  1
BJ155687|BJ155687.1 Caenorhabditis elegans cDNA clone:yk1345b03 : 3' end, single read.    42  8.5  1
BB510236|BB510236.1 Mus musculus 10 days lactation, adult female mammary gland cDNA, RIKEN full-length enriched library, clone:D730028H12, 3' end partial sequence.    42  8.5  1
AX187599|AX187599.1 Sequence 3294 from Patent WO0142467.          42  8.5  1
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122215_1(AY122215|pid:none) Drosophila melanogaster LP08941 fu...    85   2e-15
AB080297_1(AB080297|pid:none) Marsupenaeus japonicus cArp-1 mRNA...    84   3e-15
DQ443285_1(DQ443285|pid:none) Bombyx mori cyclic AMP-regulated p...    76   1e-12
AC116922_4(AC116922|pid:none) Dictyostelium discoideum chromosom...    73   8e-12
AK153389_1(AK153389|pid:none) Mus musculus bone marrow macrophag...    65   3e-11
AE017342_92(AE017342|pid:none) Cryptococcus neoformans var. neof...    70   4e-11
(Q9JHL4) RecName: Full=Drebrin-like protein; AltName: Full=SH3 d...    64   4e-11
(Q80WP1) RecName: Full=Drebrin-like protein; AltName: Full=SH3 d...    64   4e-11
AB039818_1(AB039818|pid:none) Rattus norvegicus mRNA for SH3P7r2...    64   4e-11
AB039819_1(AB039819|pid:none) Rattus norvegicus mRNA for SH3P7r3...    64   4e-11
protein update 2009. 7. 7
PSORT 

 psg: 0.50  gvh: 0.43  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 32.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSG496 is mit
5' end seq. ID SSG496F
5' end seq. 
>SSG496F.Seq
ATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTGCTTACGACGAAGCTTAGC
TGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAGGTAAAAACAAAATCGTCTT
ATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAGAAATCAACCAACCATCTGA
ACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATGAATCAAAACGTTCAAAATT
CGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTGCCAAAGCTAATGTCTCTGT
CCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTGTTGAAGTCCATTACACCGT
CGCTGATGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGTAAATCAAGTGGTGCTGA
TTACTCTGGTAACAAATCAACCAACTAAACGTTACACGCATCTAAAAATGTATACATATT
TTAAAAAAAAAAAAATTAAAAACAAAACAAAAAAAAAAAAAAAAAAGTGTATCAATTATA
ATAGTAATAATAAATAATAATAATAGATAATAT----------
Length of 5' end seq. 573
3' end seq. ID SSG496Z
3' end seq. 
>SSG496Z.Seq
----------CCGTCGCGGGTGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGTAAA
TCAAGTGGTGCTGATTACTCTGGTACCAAATCAACCCACTAAACGTTTCCCGCATCTAAA
AATGTTTACATTTTTTAAAAAAAAAAAAATTTAAAACAAAACAAAAAAAAAAAAAAAAAA
GTGTATCAATTATAATAGTAATAATAAATAATAATAATAGATAATTTAAAAATATACACA
AATTATATATTATACATATTTTTAAACAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA
AAAAAAAAA
Length of 3' end seq. 299
Connected seq. ID SSG496P
Connected seq. 
>SSG496P.Seq
ATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTGCTTACGACGAAGCTTAGC
TGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAGGTAAAAACAAAATCGTCTT
ATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAGAAATCAACCAACCATCTGA
ACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATGAATCAAAACGTTCAAAATT
CGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTGCCAAAGCTAATGTCTCTGT
CCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTGTTGAAGTCCATTACACCGT
CGCTGATGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGTAAATCAAGTGGTGCTGA
TTACTCTGGTAACAAATCAACCAACTAAACGTTACACGCATCTAAAAATGTATACATATT
TTAAAAAAAAAAAAATTAAAAACAAAACAAAAAAAAAAAAAAAAAAGTGTATCAATTATA
ATAGTAATAATAAATAATAATAATAGATAATAT----------CCGTCGCGGGTGATCTC
AATGAAGAAGAATTAATGACCAAAGTTCGTAAATCAAGTGGTGCTGATTACTCTGGTACC
AAATCAACCCACTAAACGTTTCCCGCATCTAAAAATGTTTACATTTTTTAAAAAAAAAAA
AATTTAAAACAAAACAAAAAAAAAAAAAAAAAAGTGTATCAATTATAATAGTAATAATAA
ATAATAATAATAGATAATTTAAAAATATACACAAATTATATATTATACATATTTTTAAAC
AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 872
Full length Seq ID SSG496E
Full length Seq. 
>SSG496E.Seq
ATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTGCTTACGACGAAGCTTAGC
TGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAGGTAAAAACAAAATCGTCTT
ATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAGAAATCAACCAACCATCTGA
ACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATGAATCAAAACGTTCAAAATT
CGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTGCCAAAGCTAATGTCTCTGT
CCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTGTTGAAGTCCACCGTCGCNG
NTGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGTAAATCAAGTGGTGCTGATTACT
CTGGTANCAAATCAACCNACTAAACGTTNCNCGCATCTAAAAATGTNTACATNTTTTAAA
AAAAAAAAAATTNAAAACAAAACAAAAAAAAAAAAAAAAAAGTGTATCAATTATAATAGT
AATAATAAATAATAATAATAGATAATNTTTTAAAAATATACACAAATTATATATTATACA
TATTTTTAAACAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 648