SSG487 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSG487
Library	SS (Link to library)
Clone ID	SSG487 (Link to dictyBase)
Atlas ID	-
NBRP ID	G20976
dictyBase ID	DDB0218423
Link to Contig	Contig-U04870-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSG4-D/SSG487Q.Seq.d/
Representative seq. ID	SSG487E (Link to Original site)
Representative DNA sequence	>SSG487 (SSG487Q) /CSM/SS/SSG4-D/SSG487Q.Seq.d/ GTGAAGAGGATGATGGTTATGTGCCATTTTCAAAAAGACCAGAATGGAGTGATGTAAAAC CTTTGGCACAAGATGATGGACCACATCCAATTTGCCCAATTTTATATTCAGAAGTTTTTA AGGATAAAATGAATTATTTTAGAGCAATATTAAAATCTAAAGAGAAATCACTTAGAGTAT TAGATTTATTAGAGGAAGTTATTCAAGAGAATCCATCAAATTATACCATATGGTATTATA GAAGGGAAGTATTGAAAGCCATTGAACAAGATGAAACTATTGAATATGATATTCAACAAG AGATGAACTTATTGAATGATATGGGAGAAACAGATCCAAAGAATTATCAAATTTGGAATC ATAGACGTTTTATAGTTGAAAAATATATTGGTAGTGATAAGAAAGAATTCCTCAGTGGTG TATTATTGGAGGATGCTAAAAACTATCATGCATGGTCACATAGACAATGGNTATTAAAAA CCTATCGTGATTGGAATGGTGAATTGGCAATGGTCGATAAATTATTATCGTTGGATCATC GTAATAATTCAGTTTGGAATCACCGTTTTTTCGTCATTTCAAATTTAAATCCATCTCCTT TCCCTTTGTCTTTGATCGAACGTGAAGTTGAATTTATTTGCTGTCAATCATATACGTCAT AGTCCAAATAATGAATCACCTTGGAGTTATCTTAAAGGTTTATTCAAAGGTCAAAAGATT TCCACTATTTATCCTTCCCTTTTGGATATACTATTGGAAATGAAATCAAAGTATATTGGT TGTTCTCATGTTAACTCTATCATTTTAGATATTTATCAAGAACAAAATACTAAAATTTCT TTAGAAAATTCTTTAAATATTTGTAAATTATTATCAGAAACAATTGATCCAATTCATAAA AATTATTGGAATTTTAAATATAATACAATTTCAGATCAATTGAAATTAATTAATTAAAAA AAAAAAAAAAATTATTATTTTAAATTAAAGAAATAAAAATTATATT
sequence update	1999. 4. 9
Translated Amino Acid sequence	EEDDGYVPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVL DLLEEVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQIWNH RRFIVEKYIGSDKKEFLSGVLLEDAKNYHAWSHRQWXLKTYRDWNGELAMVDKLLSLDHR NNSVWNHRFFVISNLNPSPFPLSLIEREVEFICCQSYTSskitlelsrfiqrskdf hylsfpfgytigneikvywlfsclyhfrylsrtkynffrkffkyliiirnnsnsk llefiynfrsieinlkkkkkllf*ikeikii
Translated Amino Acid sequence (All Frames)	Frame A: vkrmmvmchfqkdqngvmnlwhkmmdhiqfaqfyiqkflrikiileqynlkrnhley iyrklfkrihqiipygiiegkykplnkmkllnmifnkrtymiwekqiqriikfgi idvllknilvvirknssvvyywrmlktimhghidngykpivigmvnwqwsinyyrwii viiqfgitvfssfqiihllslclsnvklnlfavnhirhspnnespwsylkglfkgqki stiypslldillemkskyigcshvnsiildiyqeqntkislenslnickllsetidpihk nywnfkyntisdqlklinkkkknyyfklkkkly Frame B: rgwlcaifkktrmecktfgtrwttsnlpnfifrsfgnelfsnikireitsi rfirgsysresiklyhmvlkgsieshtrnyiystrdelieygrnrskelsnles tfyskiyw*eripqwciiggcklscmvttmxiknlslewigngriiivgss *fslespffrhfkfksisfpfvfdrtsiyllsiiyvivqimnhlgvilkvyskvkrf plfilpfwiyywknqsilvvlmltlsfifiknkilkflkilifvnyyqkqliqfik iigilniiqfqinnlikkkkkiiilnrnknyi Frame C: EEDDGYVPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVL DLLEEVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQIWNH RRFIVEKYIGSDKKEFLSGVLLEDAKNYHAWSHRQWXLKTYRDWNGELAMVDKLLSLDHR NNSVWNHRFFVISNLNPSPFPLSLIEREVEFICCQSYTSskitlelsrfiqrskdf hylsfpfgytigneikvywlfsclyhfrylsrtkynffrkffkyliiirnnsnsk llefiynfrsieinlkkkkkllf*ikeikii
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSG487 (SSG487Q) /CSM/SS/SSG4-D/SSG487Q.Seq.d/ 1887 0.0 SSD514 (SSD514Q) /CSM/SS/SSD5-A/SSD514Q.Seq.d/ 751 0.0 VFJ427 (VFJ427Q) /CSM/VF/VFJ4-B/VFJ427Q.Seq.d/ 40 0.064 VHI629 (VHI629Q) /CSM/VH/VHI6-B/VHI629Q.Seq.d/ 38 0.25 VFO825 (VFO825Q) /CSM/VF/VFO8-B/VFO825Q.Seq.d/ 38 0.25 VFJ616 (VFJ616Q) /CSM/VF/VFJ6-A/VFJ616Q.Seq.d/ 38 0.25 SSL649 (SSL649Q) /CSM/SS/SSL6-C/SSL649Q.Seq.d/ 38 0.25 CHF875 (CHF875Q) /CSM/CH/CHF8-D/CHF875Q.Seq.d/ 38 0.25 AFN733 (AFN733Q) /CSM/AF/AFN7-B/AFN733Q.Seq.d/ 38 0.25 AFK160 (AFK160Q) /CSM/AF/AFK1-C/AFK160Q.Seq.d/ 38 0.25
own update	2003. 6.14
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BQ697049\|BQ697049.1 NXPV_048_F08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_048_F08 5' similar to Arabidopsis thaliana sequence At3g59380 protein farnesyltransferase subunit A (FTA) see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 40 1e-05 3 AF063866\|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 38 5e-05 12 BM133565\|BM133565.1 NXLV_008_G12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_008_G12 5', mRNA sequence. 40 3e-04 2 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 0.002 13 BQ696401\|BQ696401.1 NXPV_040_G03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_040_G03 5', mRNA sequence. 42 0.005 2 AE014826\|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence. 36 0.006 10 AP003194\|AP003194.2 Clostridium perfringens DNA, complete genome, section 10/10. 36 0.015 11 BQ698136\|BQ698136.1 NXPV_064_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_064_H11 5', mRNA sequence. 40 0.016 2 AP004173\|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5. 34 0.020 10 AX251147\|AX251147.1 Sequence 115 from Patent WO0168912. 38 0.023 3
dna update	2003. 9. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value BC129222_1(BC129222\|pid:none) Danio rerio zgc:158397, mRNA (cDNA... 202 3e-63 A41013(A41013)protein farnesyltransferase (EC 2.5.1.-) alpha cha... 205 6e-63 (Q61239) RecName: Full=Protein farnesyltransferase/geranylgerany... 202 1e-61 BC157425_1(BC157425\|pid:none) Xenopus laevis hypothetical protei... 199 2e-61 BC085758_1(BC085758\|pid:none) Rattus norvegicus farnesyltransfer... 201 2e-61 (P49354) RecName: Full=Protein farnesyltransferase/geranylgerany... 200 3e-61 (Q04631) RecName: Full=Protein farnesyltransferase/geranylgerany... 199 4e-61 AF525030_1(AF525030\|pid:none) Catharanthus roseus farnesyltransf... 202 6e-60 AK060892_1(AK060892\|pid:none) Oryza sativa Japonica Group cDNA c... 190 2e-56 EF086798_1(EF086798\|pid:none) Picea sitchensis clone WS02736_F21... 184 1e-53
protein update	2009. 7. 7
PSORT	psg: 0.75 gvh: 0.16 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.09 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: nuclear 28.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: vacuolar 4.0 %: Golgi 4.0 %: mitochondrial 4.0 %: vesicles of secretory system >> prediction for SSG487 is nuc
5' end seq. ID	SSG487F
5' end seq.	>SSG487F.Seq GTGAAGAGGATGATGGTTATGTGCCATTTTCAAAAAGACCAGAATGGAGTGATGTAAAAC CTTTGGCACAAGATGATGGACCACATCCAATTTGCCCAATTTTATATTCAGAAGTTTTTA AGGATAAAATGAATTATTTTAGAGCAATATTAAAATCTAAAGAGAAATCACTTAGAGTAT TAGATTTATTAGAGGAAGTTATTCAAGAGAATCCATCAAATTATACCATATGGTATTATA GAAGGGAAGTATTGAAAGCCATTGAACAAGATGAAACTATTGAATATGATATTCAACAAG AGATGAACTTATTGAATGATATGGGAGAAACAGATCCAAAGAATTATCAAATTTGGAATC ATAGACGTTTTATAGTTGAAAAATATATTGGTAGTGATAATAAAGAGAAAGAATTCCTCA GTGGTGTATTATTGGAGGATGCTAAAAACTATCATGCATGGTCACATAGACAATGGGTAT TAAAAACCTATCGTGATTGGAATGGTGAATTGGCAATGGTCGATAAATTATTATCGTTGG ATCATCGTAATAATTCAGTTTGGAATCACCGTTTTTTCGTCATTTCAAATTTAAATCCAT CTCCTTTCCCTTTGTCTTTGATCGAACGTGAAGTTGAATTT----------
Length of 5' end seq.	641
3' end seq. ID	SSG487Z
3' end seq.	>SSG487Z.Seq ----------GAAAGAATTCCTCAGTGGTGTATTATTGGAGGATGCTAAAAACTATCATG CATGGTCACATAGACAATGGTTATTAAAAACCTATCGTGATTGGAATGGTGAATTGGCAA TGGTCGATAAATTATTATCGTTGGATCATCGTAATAATTCAGTTTGGAATCACCGTTTTT TCGTCATTTCAAATTTAAATCCATCTCCTTTCCCTTTGTCTTTGATCGAACGTGAAGTTG AATTTGCTGTCAATCATATACGTCATAGTCCAAATAATGAATCACCTTGGAGTTATCTTA AAGGTTTATTCAAAGGTCAAAAGATTTCCACTATTTATCCTTCCCTTTTGGATATACTAT TGGAAATGAAATCAAAGTATATTGGTTGTTCTCATGTTAACTCTATCATTTTAGATATTT ATCAAGAACAAAATACTAAAATTTCTTTAGAAAATTCTTTAAATATTTGTAAATTATTAT CAGAAACAATTGATCCAATTCATAAAAATTATTGGAATTTTAAATATAATACAATTTCAG ATCAATTGAAATTAATTAATTAAAAAAAAAAAAAAAATTATTATTTTAAATTAAAGAAAT AAAAATTATATTTAAAAAAACA
Length of 3' end seq.	612
Connected seq. ID	SSG487P
Connected seq.	>SSG487P.Seq GTGAAGAGGATGATGGTTATGTGCCATTTTCAAAAAGACCAGAATGGAGTGATGTAAAAC CTTTGGCACAAGATGATGGACCACATCCAATTTGCCCAATTTTATATTCAGAAGTTTTTA AGGATAAAATGAATTATTTTAGAGCAATATTAAAATCTAAAGAGAAATCACTTAGAGTAT TAGATTTATTAGAGGAAGTTATTCAAGAGAATCCATCAAATTATACCATATGGTATTATA GAAGGGAAGTATTGAAAGCCATTGAACAAGATGAAACTATTGAATATGATATTCAACAAG AGATGAACTTATTGAATGATATGGGAGAAACAGATCCAAAGAATTATCAAATTTGGAATC ATAGACGTTTTATAGTTGAAAAATATATTGGTAGTGATAATAAAGAGAAAGAATTCCTCA GTGGTGTATTATTGGAGGATGCTAAAAACTATCATGCATGGTCACATAGACAATGGGTAT TAAAAACCTATCGTGATTGGAATGGTGAATTGGCAATGGTCGATAAATTATTATCGTTGG ATCATCGTAATAATTCAGTTTGGAATCACCGTTTTTTCGTCATTTCAAATTTAAATCCAT CTCCTTTCCCTTTGTCTTTGATCGAACGTGAAGTTGAATTT----------GAAAGAATT CCTCAGTGGTGTATTATTGGAGGATGCTAAAAACTATCATGCATGGTCACATAGACAATG GTTATTAAAAACCTATCGTGATTGGAATGGTGAATTGGCAATGGTCGATAAATTATTATC GTTGGATCATCGTAATAATTCAGTTTGGAATCACCGTTTTTTCGTCATTTCAAATTTAAA TCCATCTCCTTTCCCTTTGTCTTTGATCGAACGTGAAGTTGAATTTGCTGTCAATCATAT ACGTCATAGTCCAAATAATGAATCACCTTGGAGTTATCTTAAAGGTTTATTCAAAGGTCA AAAGATTTCCACTATTTATCCTTCCCTTTTGGATATACTATTGGAAATGAAATCAAAGTA TATTGGTTGTTCTCATGTTAACTCTATCATTTTAGATATTTATCAAGAACAAAATACTAA AATTTCTTTAGAAAATTCTTTAAATATTTGTAAATTATTATCAGAAACAATTGATCCAAT TCATAAAAATTATTGGAATTTTAAATATAATACAATTTCAGATCAATTGAAATTAATTAA TTAAAAAAAAAAAAAAAATTATTATTTTAAATTAAAGAAATAAAAATTATATTTAAAAAA ACA
Length of connected seq.	1253
Full length Seq ID	SSG487E
Full length Seq.	>SSG487E.Seq GTGAAGAGGATGATGGTTATGTGCCATTTTCAAAAAGACCAGAATGGAGTGATGTAAAAC CTTTGGCACAAGATGATGGACCACATCCAATTTGCCCAATTTTATATTCAGAAGTTTTTA AGGATAAAATGAATTATTTTAGAGCAATATTAAAATCTAAAGAGAAATCACTTAGAGTAT TAGATTTATTAGAGGAAGTTATTCAAGAGAATCCATCAAATTATACCATATGGTATTATA GAAGGGAAGTATTGAAAGCCATTGAACAAGATGAAACTATTGAATATGATATTCAACAAG AGATGAACTTATTGAATGATATGGGAGAAACAGATCCAAAGAATTATCAAATTTGGAATC ATAGACGTTTTATAGTTGAAAAATATATTGGTAGTGATAAGAAAGAATTCCTCAGTGGTG TATTATTGGAGGATGCTAAAAACTATCATGCATGGTCACATAGACAATGGNTATTAAAAA CCTATCGTGATTGGAATGGTGAATTGGCAATGGTCGATAAATTATTATCGTTGGATCATC GTAATAATTCAGTTTGGAATCACCGTTTTTTCGTCATTTCAAATTTAAATCCATCTCCTT TCCCTTTGTCTTTGATCGAACGTGAAGTTGAATTTATTTGCTGTCAATCATATACGTCAT AGTCCAAATAATGAATCACCTTGGAGTTATCTTAAAGGTTTATTCAAAGGTCAAAAGATT TCCACTATTTATCCTTCCCTTTTGGATATACTATTGGAAATGAAATCAAAGTATATTGGT TGTTCTCATGTTAACTCTATCATTTTAGATATTTATCAAGAACAAAATACTAAAATTTCT TTAGAAAATTCTTTAAATATTTGTAAATTATTATCAGAAACAATTGATCCAATTCATAAA AATTATTGGAATTTTAAATATAATACAATTTCAGATCAATTGAAATTAATTAATTAAAAA AAAAAAAAAAATTATTATTTTAAATTAAAGAAATAAAAATTATATT
Length of full length seq.	1006

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas