NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG473
Library SS
(Link to library)
Clone ID SSG473
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SSG473 (SSG473Q) /CSM/SS/SSG4-D/SSG473Q.Seq.d/
AAATGACATCAGTGGAATCGTACAACCAGGCCAAAATCTCTCACAACGTCCAATAAACGG
CCAATATGGCTGGGGACCAGCAGCAGGAAGTGCCGCAAATCCACGTGGCGATCTCCGTGG
TTACACTTACAATATTAGATAGTTTCGCTGTCTATTTCTGAATATTCAGAAATCTTTGTT
TAATGCCAAAAATAGTAGATATCTATTATATTTTCTCATTTTATAAATCTGATAAGATCT
GTCTTAAATAAAAAAAATCAAATTTTTTTATAAATTAATAAAAAAAAXXXXXXXXXX
sequence update 1998.10.20
Translated Amino Acid sequence 
NDISGIVQPGQNLSQRPINGQYGWGPAAGSAANPRGDLRGYTYNIR*frclflniqkslf
naknsryllyflil*i**dls*ikkikffyklikk---
Translated Amino Acid sequence (All Frames) 
Frame A:
k*hqwnrttrpkslttsnkrpiwlgtssrkcrkstwrspwlhlqy*ivslsiseyseifv
*cqk**isiifshfinlirsvlnkknqifl*inkk---


Frame B:
NDISGIVQPGQNLSQRPINGQYGWGPAAGSAANPRGDLRGYTYNIR*frclflniqkslf
naknsryllyflil*i**dls*ikkikffyklikk---


Frame C:
mtsvesynqakishnvq*tanmagdqqqevpqihvaisvvtltildsfavyf*ifrnlcl
mpkivdiyyifsfyksdkiclk*kksnffin**k---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG473 (SSG473Q) /CSM/SS/SSG4-D/SSG473Q.Seq.d/                        484   e-136
VSJ625 (VSJ625Q) /CSM/VS/VSJ6-B/VSJ625Q.Seq.d/                        470   e-132
VSE623 (VSE623Q) /CSM/VS/VSE6-A/VSE623Q.Seq.d/                        470   e-132
VHM579 (VHM579Q) /CSM/VH/VHM5-D/VHM579Q.Seq.d/                        470   e-132
SSM657 (SSM657Q) /CSM/SS/SSM6-C/SSM657Q.Seq.d/                        470   e-132
SSM492 (SSM492Q) /CSM/SS/SSM4-D/SSM492Q.Seq.d/                        470   e-132
SSM458 (SSM458Q) /CSM/SS/SSM4-C/SSM458Q.Seq.d/                        470   e-132
SSM456 (SSM456Q) /CSM/SS/SSM4-C/SSM456Q.Seq.d/                        470   e-132
SSL432 (SSL432Q) /CSM/SS/SSL4-B/SSL432Q.Seq.d/                        470   e-132
SSL389 (SSL389Q) /CSM/SS/SSL3-D/SSL389Q.Seq.d/                        470   e-132
own update 2002.12.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   462   e-126  1
AC115608|AC115608.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.   458   e-125  1
AC121604|AC121604.2 Mus musculus chromosome UNK clone RP23-312E2, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50   0.017  1
AC140217|AC140217.1 Mus musculus chromosome UNK clone RP23-279O5, WORKING DRAFT SEQUENCE, 14 unordered pieces.    50   0.017  1
AC025299|AC025299.1 Homo sapiens clone RP11-21P5, LOW-PASS SEQUENCE SAMPLING.    38   0.091  2
AC008442|AC008442.6 Homo sapiens chromosome 5 clone CTC-331P4, complete sequence.    46   0.17   4
AC108886|AC108886.2 Rattus norvegicus clone RP31-392N9 strain Brown Norway, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44   0.17   2
AC129135|AC129135.4 Rattus norvegicus clone CH230-23C19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   0.24   2
AQ112874|AQ112874.1 CIT-HSP-2376G2.TR CIT-HSP Homo sapiens genomic clone 2376G2, genomic survey sequence.    46   0.27   1
AC011344|AC011344.6 Homo sapiens chromosome 5 clone CTC-287O14, WORKING DRAFT SEQUENCE, 3 ordered pieces.    46   0.27   1
dna update 2004. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_51(AC116957|pid:none) Dictyostelium discoideum chromoso...    94   2e-18
protein update 2009. 1.30
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for SSG473 is cyt
5' end seq. ID SSG473F
5' end seq. 
>SSG473F.Seq
AAATGACATCAGTGGAATCGTACAACCAGGCCAAAATCTCTCACAACGTCCAATAAACGG
CCAATATGGCTGGGGACCAGCAGCAGGAAGTGCCGCAAATCCACGTGGCGATCTCCGTGG
TTACACTTACAATATTAGATAGTTTCGCTGTCTATTTCTGAATATTCAGAAATCTTTGTT
TAATGCCAAAAATAGTAGATATCTATTATATTTTCTCATTTTATAAATCTGATAAGATCT
GTCTTAAATAAAAAAAATCAAATTTTTTTATAAATTAATAAAAAAAA
Length of 5' end seq. 287
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -