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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG469
Library SS
(Link to library)
Clone ID SSG469
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09393-1
Original site URL
Representative seq. ID SSG469P
(Link to Original site)
Representative DNA sequence 
>SSG469 (SSG469Q) /CSM/SS/SSG4-C/SSG469Q.Seq.d/
AATAATATAAAAAAAAAAAAAAAAAAAAATTAAAAAAAATTAAAGAAACAAATATTAAAA
AAAATAAAAAAAAAATTTAATAATGGGTAAATGGTTAATGTTAATTGATCCAGCATCATT
TTTGATAATAGGGATACCATTATTTGCCATATGGTATGGTAGTTTTAGATCATATAAATT
TAATATGGAGAATCAACTTTTAATAATCGATAACAATGATATGCCAAACAAATGGTTATT
AATACTACCTTGTATTGGTTCATTATCACTCCTCACCTTTTTTTATTATATGGATGCAAT
GTATAATATATTAATTTGTGTTATAGTTATAACATCACTATTAGCCATATCTTATGTTAC
ATATCCATTTTTTCAATATTTATTACCAAAGTTTTCAATTCATGATTCTTCTAAAAAATT
AAAAATGTTAGATGATGAAGTTACAATAACGTTATCATCTGTAATTGCATTTGTTTGTGG
TGTAATATTAACTTTATTTTGGTATTACTCAAATCATTTTTTATTTGTTAATTTXXXXXX
XXXXCATTATTCGCTGTTTTAATTACAGAGTATGGTCAACCTGCCTTATTATACCTTGTC
CCAACTGTAACTTTACCAACAATTTTCTGTGCTCATAAACGTGGTCATCGATCAATTTTA
ATGAAACCAATACCAAAACCAAAACAAGATCAAGAAAGTTTAATAAATTCTTGAAAAAAA
AAAAAATAAAAAAAAAAAAAAATAGTGATTAGAAA
sequence update 1998.10.20
Translated Amino Acid sequence 
ii*kkkkkkikkn*rnky*kk*KKNLIMGKWLMLIDPASFLIIGIPLFAIWYGSFRSYKF
NMENQLLIIDNNDMPNKWLLILPCIGSLSLLTFFYYMDAMYNILICVIVITSLLAISYVT
YPFFQYLLPKFSIHDSSKKLKMLDDEVTITLSSVIAFVCGVILTLFWYYSNHFLFVN---

---LFAVLITEYGQPALLYLVPTVTLPTIFCAHKRGHRSILMKPIPKPKQDQESLINS*k
kkk*kkkkivir
Translated Amino Acid sequence (All Frames) 
Frame A:
nnikkkkkkn*kklkkqilkkikkkfnng*mvnvn*ssiifdnrdtiichmvw*f*ii*i
*ygestfnnr*q*yakqmvinttlywfiitphlfllygcnv*yinlcysynitishilcy
isifsifitkvfns*ff*kiknvr**synnviicnciclwcninfilvllksffic*f--
-

---hyslf*lqsmvnlpyytlsql*lyqqfsvlinvvidqf**nqyqnqnkikkv**ile
kkknkkkkk**le

Frame B:
ii*kkkkkkikkn*rnky*kk*KKNLIMGKWLMLIDPASFLIIGIPLFAIWYGSFRSYKF
NMENQLLIIDNNDMPNKWLLILPCIGSLSLLTFFYYMDAMYNILICVIVITSLLAISYVT
YPFFQYLLPKFSIHDSSKKLKMLDDEVTITLSSVIAFVCGVILTLFWYYSNHFLFVN---

---iircfnyrvwstcliipcpncnftnnflcs*twssinfnetntktktrsrkfnkflk
kkkikkkknsd*k

Frame C:
*ykkkkkkklkkiketnikknkkki**wvng*c*liqhhf***gyhylpygmvvldhinl
iwrinf**sitmicqtngy*yylvlvhyhsspffiiwmqciiy*fvl*l*hhy*pylmlh
ihffniyyqsfqfmillkn*kc*mmklq*ryhl*lhlfvv*y*lyfgitqiifylli---

---LFAVLITEYGQPALLYLVPTVTLPTIFCAHKRGHRSILMKPIPKPKQDQESLINS*k
kkk*kkkkivir
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG469 (SSG469Q) /CSM/SS/SSG4-C/SSG469Q.Seq.d/                        626   e-178
VSJ122 (VSJ122Q) /CSM/VS/VSJ1-A/VSJ122Q.Seq.d/                         38   0.19
VSE147 (VSE147Q) /CSM/VS/VSE1-B/VSE147Q.Seq.d/                         38   0.19
VSA767 (VSA767Q) /CSM/VS/VSA7-C/VSA767Q.Seq.d/                         38   0.19
SSK154 (SSK154Q) /CSM/SS/SSK1-C/SSK154Q.Seq.d/                         38   0.19
SSI196 (SSI196Q) /CSM/SS/SSI1-D/SSI196Q.Seq.d/                         38   0.19
VSF453 (VSF453Q) /CSM/VS/VSF4-C/VSF453Q.Seq.d/                         36   0.75
VSB684 (VSB684Q) /CSM/VS/VSB6-D/VSB684Q.Seq.d/                         36   0.75
VHO861 (VHO861Q) /CSM/VH/VHO8-C/VHO861Q.Seq.d/                         36   0.75
VHL724 (VHL724Q) /CSM/VH/VHL7-A/VHL724Q.Seq.d/                         36   0.75
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   2e-05  10
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   1e-04  12
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             32   5e-04  16
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     32   5e-04  16
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   0.001  21
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    38   0.001  14
AB010579|AB010579.1 Bombyx mori gene for xanthine dehydrogenase, partial cds.    34   0.003  5
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           38   0.003  22
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    36   0.004  13
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    34   0.014  10
dna update 2004. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK223590_1(AK223590|pid:none) Homo sapiens mRNA for SPPL3 protei...    51   3e-05
BC086646_1(BC086646|pid:none) Mus musculus signal peptide peptid...    51   3e-05
AK014709_1(AK014709|pid:none) Mus musculus 0 day neonate head cD...    51   3e-05
(Q9CUS9) RecName: Full=Signal peptide peptidase-like 3;         ...    51   3e-05
AK291161_1(AK291161|pid:none) Homo sapiens cDNA FLJ75194 complet...    49   2e-04
(Q8TCT6) RecName: Full=Signal peptide peptidase-like 3;         ...    47   5e-04
EU961984_1(EU961984|pid:none) Zea mays clone 239473 signal pepti...    44   0.005
BC097153_1(BC097153|pid:none) Danio rerio signal peptide peptida...    44   0.005
BC061375_1(BC061375|pid:none) Xenopus tropicalis signal peptide ...    42   0.027
AK074916_1(AK074916|pid:none) Homo sapiens cDNA FLJ90435 fis, cl...    41   0.046
protein update 2009. 6.12
PSORT 

 psg: 0.82  gvh: 0.58  alm: 0.17  top: 0.33  tms: 0.33  mit: 0.21  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSG469 is end
5' end seq. ID SSG469F
5' end seq. 
>SSG469F.Seq
AATAATATAAAAAAAAAAAAAAAAAAAAATTAAAAAAAATTAAAGAAACAAATATTAAAA
AAAATAAAAAAAAAATTTAATAATGGGTAAATGGTTAATGTTAATTGATCCAGCATCATT
TTTGATAATAGGGATACCATTATTTGCCATATGGTATGGTAGTTTTAGATCATATAAATT
TAATATGGAGAATCAACTTTTAATAATCGATAACAATGATATGCCAAACAAATGGTTATT
AATACTACCTTGTATTGGTTCATTATCACTCCTCACCTTTTTTTATTATATGGATGCAAT
GTATAATATATTAATTTGTGTTATAGTTATAACATCACTATTAGCCATATCTTATGTTAC
ATATCCATTTTTTCAATATTTATTACCAAAGTTTTCAATTCATGATTCTTCTAAAAAATT
AAAAATGTTAGATGATGAAGTTACAATAACGTTATCATCTGTAATTGCATTTGTTTGTGG
TGTAATATTAACTTTATTTTGGTATTACTCAAATCATTTTTTATTTGTTAATTT------
----
Length of 5' end seq. 534
3' end seq. ID SSG469Z
3' end seq. 
>SSG469Z.Seq
----------CATTATTCGCTGTTTTAATTACAGAGTATGGTCAACCTGCCTTATTATAC
CTTGTCCCAACTGTAACTTTACCAACAATTTTCTGTGCTCATAAACGTGGTCATCGATCA
ATTTTAATGAAACCAATACCAAAACCAAAACAAGATCAAGAAAGTTTAATAAATTCTTGA
AAAAAAAAAAAATAAAAAAAAAAAAAAATAGTGATTAGAAA
Length of 3' end seq. 211
Connected seq. ID SSG469P
Connected seq. 
>SSG469P.Seq
AATAATATAAAAAAAAAAAAAAAAAAAAATTAAAAAAAATTAAAGAAACAAATATTAAAA
AAAATAAAAAAAAAATTTAATAATGGGTAAATGGTTAATGTTAATTGATCCAGCATCATT
TTTGATAATAGGGATACCATTATTTGCCATATGGTATGGTAGTTTTAGATCATATAAATT
TAATATGGAGAATCAACTTTTAATAATCGATAACAATGATATGCCAAACAAATGGTTATT
AATACTACCTTGTATTGGTTCATTATCACTCCTCACCTTTTTTTATTATATGGATGCAAT
GTATAATATATTAATTTGTGTTATAGTTATAACATCACTATTAGCCATATCTTATGTTAC
ATATCCATTTTTTCAATATTTATTACCAAAGTTTTCAATTCATGATTCTTCTAAAAAATT
AAAAATGTTAGATGATGAAGTTACAATAACGTTATCATCTGTAATTGCATTTGTTTGTGG
TGTAATATTAACTTTATTTTGGTATTACTCAAATCATTTTTTATTTGTTAATTT------
----CATTATTCGCTGTTTTAATTACAGAGTATGGTCAACCTGCCTTATTATACCTTGTC
CCAACTGTAACTTTACCAACAATTTTCTGTGCTCATAAACGTGGTCATCGATCAATTTTA
ATGAAACCAATACCAAAACCAAAACAAGATCAAGAAAGTTTAATAAATTCTTGAAAAAAA
AAAAAATAAAAAAAAAAAAAAATAGTGATTAGAAA
Length of connected seq. 745
Full length Seq ID -
Full length Seq. -
Length of full length seq. -