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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG453
Library SS
(Link to library)
Clone ID SSG453
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15948-1
Original site URL
Representative seq. ID SSG453Z
(Link to Original site)
Representative DNA sequence 
>SSG453 (SSG453Q) /CSM/SS/SSG4-C/SSG453Q.Seq.d/
XXXXXXXXXXCTATGGTTTCAATTGGTTTAGGTATTGTTGGTGGTTTACTCGTTGGTGTT
ATTTTATTACAACTTAAGAAAATTAAAGGTCTTAAATCAAAAGAATACTACCAAGATAGT
GCTTTCTGGATTTTACCAATCGATTATCCAAAAGATGTTGCAACCGTTGTTGCTTTAAAT
AATGCTGCTACCTCAGAAGATACTGCTGGTGGCGACGATGAAGAAGAAGGTGTTGGCAAA
GAACATGGTGCTGTTGAAATGGGCAAACACAATAGAATCGTTCAACCAAAACAAGATAAT
AAATATCATAAACAACTTCCAAGTGATGATGAAGAAGAAGATGAATTTAAACAAGAACCA
ATTTAAAATTATTTATTAAAAAAGATTTAAATAATATTGTAAAAAAAAAAAAAAAAAAAA
AATTAAAAATAATAAAAAAATATAAATTTTTAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 3.21
Translated Amino Acid sequence 
---MVSIGLGIVGGLLVGVILLQLKKIKGLKSKEYYQDSAFWILPIDYPKDVATVVALNN
AATSEDTAGGDDEEEGVGKEHGAVEMGKHNRIVQPKQDNKYHKQLPSDDEEEDEFKQEPI
*nyllkki*iil*kkkkkkn*k**kninf*kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ygfnwfrycwwftrwcyfitt*en*rs*ikrilpr*cfldftnrlskrccnrccfk*
ccylrrycwwrr*rrrcwqrtwcc*ngqtq*nrstktr**is*ttsk***rrr*i*trtn
lklfikkdlnnivkkkkkkklkiikkykflkkkkkk


Frame B:
---MVSIGLGIVGGLLVGVILLQLKKIKGLKSKEYYQDSAFWILPIDYPKDVATVVALNN
AATSEDTAGGDDEEEGVGKEHGAVEMGKHNRIVQPKQDNKYHKQLPSDDEEEDEFKQEPI
*nyllkki*iil*kkkkkkn*k**kninf*kkkkkk


Frame C:
---wfqlv*vllvvyslvlfyynlrklkvlnqknttkivlsgfyqsiiqkmlqplll*im
llpqkillvatmkkkvlaknmvllkwantiesfnqnkiiniinnfqvmmkkkmnlnknqf
kiiy*krfk*yckkkkkkkiknnkki*ifkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG543 (SSG543Q) /CSM/SS/SSG5-B/SSG543Q.Seq.d/                        773   0.0
SSG535 (SSG535Q) /CSM/SS/SSG5-B/SSG535Q.Seq.d/                        773   0.0
SSG453 (SSG453Q) /CSM/SS/SSG4-C/SSG453Q.Seq.d/                        773   0.0
SLE507 (SLE507Q) /CSM/SL/SLE5-A/SLE507Q.Seq.d/                        773   0.0
SLE447 (SLE447Q) /CSM/SL/SLE4-B/SLE447Q.Seq.d/                        773   0.0
FC-AC22 (FC-AC22Q) /CSM/FC/FC-AC/FC-AC22Q.Seq.d/                      773   0.0
VFI668 (VFI668Q) /CSM/VF/VFI6-C/VFI668Q.Seq.d/                        700   0.0
VFN243 (VFN243Q) /CSM/VF/VFN2-B/VFN243Q.Seq.d/                        680   0.0
VFJ266 (VFJ266Q) /CSM/VF/VFJ2-C/VFJ266Q.Seq.d/                        650   0.0
VFJ587 (VFJ587Q) /CSM/VF/VFJ5-D/VFJ587Q.Seq.d/                        626   e-179
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF193811|AF193811.1 Dictyostelium discoideum Rh-like glycoprotein RhgA mRNA, complete cds.   773   0.0    1
AF510714|AF510714.1 Dictyostelium discoideum Rh-like glycoprotein gene, complete cds.   773   0.0    1
AF447925|AF447925.1 Dictyostelium discoideum RhgB mRNA, complete cds.    86   2e-14  3
AF447924|AF447924.1 Dictyostelium discoideum RhgB mRNA, complete cds.    86   3e-14  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    46   7e-08  15
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   8e-07  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   4e-06  17
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   1e-05  11
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    40   2e-05  9
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    38   2e-05  10
dna update 2004. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF193811_1(AF193811|pid:none) Dictyostelium discoideum Rh-like g...   117   1e-25
AF447924_1(AF447924|pid:none) Dictyostelium discoideum RhgB mRNA...    42   0.005
protein update 2009. 1.30
PSORT 

 psg: 0.97  gvh: 0.50  alm: 0.21  top: 0.67  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSG453 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG453Z
3' end seq. 
>SSG453Z.Seq
----------CTATGGTTTCAATTGGTTTAGGTATTGTTGGTGGTTTACTCGTTGGTGTT
ATTTTATTACAACTTAAGAAAATTAAAGGTCTTAAATCAAAAGAATACTACCAAGATAGT
GCTTTCTGGATTTTACCAATCGATTATCCAAAAGATGTTGCAACCGTTGTTGCTTTAAAT
AATGCTGCTACCTCAGAAGATACTGCTGGTGGCGACGATGAAGAAGAAGGTGTTGGCAAA
GAACATGGTGCTGTTGAAATGGGCAAACACAATAGAATCGTTCAACCAAAACAAGATAAT
AAATATCATAAACAACTTCCAAGTGATGATGAAGAAGAAGATGAATTTAAACAAGAACCA
ATTTAAAATTATTTATTAAAAAAGATTTAAATAATATTGTAAAAAAAAAAAAAAAAAAAA
AATTAAAAATAATAAAAAAATATAAATTTTTAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 461
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -