>SSG441 (SSG441Q) /CSM/SS/SSG4-B/SSG441Q.Seq.d/
XXXXXXXXXXAATTATTAATAGAGAACCATCAGAAAAAATTTGTCAAGAGATTAAAGCTT
GTCCAATACCAACCCCATCTCCATCGCCATCCAAACAAGTTAAACCAAAAAGAAATGAAG
ATGATGCTCTACAATGTACAATTTGTAAATTGGTTGCCACTAAATTAGAAGAGTACATTC
AATCAAATAAAACCATTGAAGAGATTGAAAATGAATTGGATGATTTCTGTAAAATTGCTT
TTGAAAAAGATCCAACCCAATGCCAAGGTTTTGTACAACAATATGTTCCAATGATTTTAT
CTTTTATCAAGAGTAAAGAGGATCCAACTCAAGCTTGCATTAAATTAAAATTCTGTACAT
CTTCAAGAGTAACTAAAGCAATTCTTAGTCATCATGTTTTGATTAATAAGAATTATTAAA
ACATTAATTAAAAAAATAAAAAAATAAAAAATAAAAAATAAATAATAAAGAAATAATAAA
AATTTAAATAAAATCTATCTATCCT

---IINREPSEKICQEIKACPIPTPSPSPSKQVKPKRNEDDALQCTICKLVATKLEEYIQ
SNKTIEEIENELDDFCKIAFEKDPTQCQGFVQQYVPMILSFIKSKEDPTQACIKLKFCTS
SRVTKAILSHHVLINKNY*nin*knkkiknkk*iikk**kfk*nlsi

Frame A:
---IINREPSEKICQEIKACPIPTPSPSPSKQVKPKRNEDDALQCTICKLVATKLEEYIQ
SNKTIEEIENELDDFCKIAFEKDPTQCQGFVQQYVPMILSFIKSKEDPTQACIKLKFCTS
SRVTKAILSHHVLINKNY*nin*knkkiknkk*iikk**kfk*nlsi


Frame B:
---llienhqkkfvkrlklvqyqphlhrhpnklnqkemkmmlynvqfvnwlpln*kstfn
qikplkrlkmnwmisvklllkkiqpnakvlynnmfq*fyllsrvkriqlklaln*nsvhl
qe*lkqflvimf*liriiktlikkikk*kiknk**rnnknlnkiyls


Frame C:
---y**rtirknlsrd*slsntnpisiaiqts*tkkk*r*cstmynl*igch*irrvhsi
k*nh*rd*k*ig*fl*ncf*krsnpmprfctticsndfifyqe*rgsnsslh*ikilyif
ksn*sns*sscfd**ellkh*lkk*knkk*kinnkeiiki*iksiyp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ869 (SSJ869Q) /CSM/SS/SSJ8-C/SSJ869Q.Seq.d/                        805   0.0
SSH403 (SSH403Q) /CSM/SS/SSH4-A/SSH403Q.Seq.d/                        805   0.0
SSG441 (SSG441Q) /CSM/SS/SSG4-B/SSG441Q.Seq.d/                        805   0.0
SSH302 (SSH302Q) /CSM/SS/SSH3-A/SSH302Q.Seq.d/                        773   0.0
SSC244 (SSC244Q) /CSM/SS/SSC2-B/SSC244Q.Seq.d/                        743   0.0
SSB889 (SSB889Q) /CSM/SS/SSB8-D/SSB889Q.Seq.d/                        716   0.0
SSM477 (SSM477Q) /CSM/SS/SSM4-D/SSM477Q.Seq.d/                        712   0.0
SSE704 (SSE704Q) /CSM/SS/SSE7-A/SSE704Q.Seq.d/                        172   3e-42
SSK260 (SSK260Q) /CSM/SS/SSK2-C/SSK260Q.Seq.d/                         38   0.13
VSD193 (VSD193Q) /CSM/VS/VSD1-D/VSD193Q.Seq.d/                         36   0.49

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC139722|AC139722.1 Homo sapiens BAC clone RP11-100N20 from 4, complete sequence.    50   0.015  3
AC015949|AC015949.3 Homo sapiens chromosome 4 clone RP11-110P12 map 4, WORKING DRAFT SEQUENCE, 13 unordered pieces.    50   0.026  3
BX000428|BX000428.10 Mouse DNA sequence from clone RP23-474G7 on chromosome X.    44   0.095  4
AL385453|AL385453.1 Medicago truncatula EST MtBC28F08F1 : T3 end of clone MtBC28F08 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    48   0.12   1
AJ502580|AJ502580.1 Medicago truncatula EST, clone mtgmadc120022g02.    48   0.12   1
BF638451|BF638451.1 NF057H07PL1F1062 Phosphate starved leaf Medicago truncatula cDNA clone NF057H07PL 5', mRNA sequence.    48   0.12   1
BF638705|BF638705.1 NF063H02PL1F1026 Phosphate starved leaf Medicago truncatula cDNA clone NF063H02PL 5', mRNA sequence.    48   0.12   1
BF638975|BF638975.1 NF063E10PL1F1081 Phosphate starved leaf Medicago truncatula cDNA clone NF063E10PL 5', mRNA sequence.    48   0.12   1
BE941652|BE941652.1 EST421231 MGHG Medicago truncatula cDNA clone pMGHG-6K11, mRNA sequence.    48   0.12   1
AW584656|AW584656.1 N210758e MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone MHAM-2P4, mRNA sequence.    48   0.12   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m...    68   1e-10
DQ071890_1(DQ071890|pid:none) Trichomonas vaginalis saposin-like...    58   1e-07
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com...    58   1e-07
(O13035) RecName: Full=Proactivator polypeptide; Contains:   Rec...    58   1e-07
AF196309_1(AF196309|pid:none) Naegleria fowleri naegleriapore B ...    56   4e-07
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m...    56   4e-07
AC116956_84(AC116956|pid:none) Dictyostelium discoideum chromoso...    54   2e-06
AF175768_1(AF175768|pid:none) Dictyostelium discoideum SAPLIP C ...    54   2e-06
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ...    53   3e-06
(P10960) RecName: Full=Sulfated glycoprotein 1;          Short=S...    52   6e-06

 psg: 0.66  gvh: 0.33  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSG441 is nuc

>SSG441Z.Seq
----------AATTATTAATAGAGAACCATCAGAAAAAATTTGTCAAGAGATTAAAGCTT
GTCCAATACCAACCCCATCTCCATCGCCATCCAAACAAGTTAAACCAAAAAGAAATGAAG
ATGATGCTCTACAATGTACAATTTGTAAATTGGTTGCCACTAAATTAGAAGAGTACATTC
AATCAAATAAAACCATTGAAGAGATTGAAAATGAATTGGATGATTTCTGTAAAATTGCTT
TTGAAAAAGATCCAACCCAATGCCAAGGTTTTGTACAACAATATGTTCCAATGATTTTAT
CTTTTATCAAGAGTAAAGAGGATCCAACTCAAGCTTGCATTAAATTAAAATTCTGTACAT
CTTCAAGAGTAACTAAAGCAATTCTTAGTCATCATGTTTTGATTAATAAGAATTATTAAA
ACATTAATTAAAAAAATAAAAAAATAAAAAATAAAAAATAAATAATAAAGAAATAATAAA
AATTTAAATAAAATCTATCTATCCT