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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG432
Library SS
(Link to library)
Clone ID SSG432
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13979-1
Original site URL
Representative seq. ID SSG432Z
(Link to Original site)
Representative DNA sequence 
>SSG432 (SSG432Q) /CSM/SS/SSG4-B/SSG432Q.Seq.d/
XXXXXXXXXXGTACGTTCCAGACATTGGTATTGTTGTGTCAAGTTCATTCTTTGGTTCAT
GGATCTTTGTGGCTGGCATTGAGCAATTCATTGGCACCGGTTTCCCAAATCCAATGGTCG
TACTATTCAATAGAGATTGGGATAGACTTGTTGTCATCGAAGAAAGTGCATTCTTAGAGT
GTCTATTGGTTTGTTCAATTATGCTTACTTCATTATTAATCCAAATCAAGACTTTGGTAC
CATCCTCTAATGAAGTTCAAATGTTGGATATCGTTTCTTTAATTCAAGAGAAAGTAATTG
AAAAAGTTGTCACTGATAAAACCATTACTCCATTTGACCTCGAAACCGATTTACGTGAAG
TTTTAGTCGATGATGAAGTAGTTTCCAAAGTTCACAACTTAATCTTTGGTGTGGGTCTTC
CAGTTATCAAATCAGTTGAGCTAATAGCTGGCGATGATGACAATAATGATATGGTCACTC
CAAATGGTGATGATATTTTACCACCAACTTCTGACATTAAAACCTATTATTTTGAAAAAT
TAATTGGTAAATCAGAATCTTCAAAACCATTAATTATAAATTAAAATTATTTAATTTTTT
TTAAATAAAATAAAATAAAAAAACAAATAAAATAAACAAAAAAAGTTTGTAAAGGAAAA
sequence update 1998. 3.21
Translated Amino Acid sequence 
---YVPDIGIVVSSSFFGSWIFVAGIEQFIGTGFPNPMVVLFNRDWDRLVVIEESAFLEC
LLVCSIMLTSLLIQIKTLVPSSNEVQMLDIVSLIQEKVIEKVVTDKTITPFDLETDLREV
LVDDEVVSKVHNLIFGVGLPVIKSVELIAGDDDNNDMVTPNGDDILPPTSDIKTYYFEKL
IGKSESSKPLIIN*nyliffk*nkikkqik*tkkvckgk
Translated Amino Acid sequence (All Frames) 
Frame A:
---YVPDIGIVVSSSFFGSWIFVAGIEQFIGTGFPNPMVVLFNRDWDRLVVIEESAFLEC
LLVCSIMLTSLLIQIKTLVPSSNEVQMLDIVSLIQEKVIEKVVTDKTITPFDLETDLREV
LVDDEVVSKVHNLIFGVGLPVIKSVELIAGDDDNNDMVTPNGDDILPPTSDIKTYYFEKL
IGKSESSKPLIIN*nyliffk*nkikkqik*tkkvckgk


Frame B:
---tfqtlvllcqvhslvhgslwlalsnslapvsqiqwsyysieigidllsskkvhs*sv
ywfvqlcllhy*sksrlwyhplmkfkcwisfl*fkrk*lkklslikpllhltskpiyvkf
*smmk*fpkftt*slvwvfqlsnqls**lammtimiwslqmvmifyhqlltlkpiilkn*
lvnqnlqnh*l*ikii*fflnkik*knk*nkqkkfvke


Frame C:
---rsrhwyccvkfilwfmdlcgwh*aihwhrfpksngrtiq*rlg*tcchrrkcilrvs
iglfnyayfiinpnqdfgtil**ssnvgyrffnsresn*ksch**nhysi*prnrft*sf
sr**ssfqssqlnlwcgsssyqis*answr**q**yghskw**yfttnf*h*nllf*kin
w*irifktinyklklfnff*ik*nkktnkinkksl*rk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM121 (SSM121Q) /CSM/SS/SSM1-A/SSM121Q.Seq.d/                       1122   0.0
SSG432 (SSG432Q) /CSM/SS/SSG4-B/SSG432Q.Seq.d/                       1122   0.0
SSG167 (SSG167Q) /CSM/SS/SSG1-C/SSG167Q.Seq.d/                       1122   0.0
SLB601 (SLB601Q) /CSM/SL/SLB6-A/SLB601Q.Seq.d/                       1106   0.0
CFI289 (CFI289Q) /CSM/CF/CFI2-D/CFI289Q.Seq.d/                       1094   0.0
AFL469 (AFL469Q) /CSM/AF/AFL4-C/AFL469Q.Seq.d/                       1086   0.0
SSE466 (SSE466Q) /CSM/SS/SSE4-C/SSE466Q.Seq.d/                       1078   0.0
SSF130 (SSF130Q) /CSM/SS/SSF1-B/SSF130Q.Seq.d/                       1076   0.0
SSM439 (SSM439Q) /CSM/SS/SSM4-B/SSM439Q.Seq.d/                       1037   0.0
SLF452 (SLF452Q) /CSM/SL/SLF4-C/SLF452Q.Seq.d/                       1009   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.035  14
AL590148|AL590148.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   0.053  4
AC139194|AC139194.1 Pan troglodytes BAC clone RP43-164C2 from Y, complete sequence.    38   0.085  5
AX926712|AX926712.1 Sequence 2 from Patent WO03084989.             38   0.20   6
AC139192|AC139192.1 Pan troglodytes BAC clone RP43-44N16 from Y, complete sequence.    38   0.20   4
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   0.59   9
AC002131|AC002131.1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence.    46   0.63   1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   0.78   10
AR345552|AR345552.1 Sequence 163 from patent US 6583275.           36   0.80   2
AX573238|AX573238.1 Sequence 1 from Patent WO02074992.             34   1.2    2
dna update 2004. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR380947_77(CR380947|pid:none) Candida glabrata strain CBS138 ch...    36   0.86
protein update 2009. 1.30
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.24  top: 0.47  tms: 0.20  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SSG432 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG432Z
3' end seq. 
>SSG432Z.Seq
----------GTACGTTCCAGACATTGGTATTGTTGTGTCAAGTTCATTCTTTGGTTCAT
GGATCTTTGTGGCTGGCATTGAGCAATTCATTGGCACCGGTTTCCCAAATCCAATGGTCG
TACTATTCAATAGAGATTGGGATAGACTTGTTGTCATCGAAGAAAGTGCATTCTTAGAGT
GTCTATTGGTTTGTTCAATTATGCTTACTTCATTATTAATCCAAATCAAGACTTTGGTAC
CATCCTCTAATGAAGTTCAAATGTTGGATATCGTTTCTTTAATTCAAGAGAAAGTAATTG
AAAAAGTTGTCACTGATAAAACCATTACTCCATTTGACCTCGAAACCGATTTACGTGAAG
TTTTAGTCGATGATGAAGTAGTTTCCAAAGTTCACAACTTAATCTTTGGTGTGGGTCTTC
CAGTTATCAAATCAGTTGAGCTAATAGCTGGCGATGATGACAATAATGATATGGTCACTC
CAAATGGTGATGATATTTTACCACCAACTTCTGACATTAAAACCTATTATTTTGAAAAAT
TAATTGGTAAATCAGAATCTTCAAAACCATTAATTATAAATTAAAATTATTTAATTTTTT
TTAAATAAAATAAAATAAAAAAACAAATAAAATAAACAAAAAAAGTTTGTAAAGGAAAA
Length of 3' end seq. 649
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -