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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG427
Library SS
(Link to library)
Clone ID SSG427
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSG427Z
(Link to Original site)
Representative DNA sequence 
>SSG427 (SSG427Q) /CSM/SS/SSG4-B/SSG427Q.Seq.d/
XXXXXXXXXXATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAAT
GATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCT
GCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAA
CAAACTACCAAAAGGTTTTAATATTGGTGGTCAACCAGGTAATCCAACAAATTAATTAAA
TAATAATAATAAAAAAAGAAAAAAATAAAAAAAAAATAAAAAAAAAATATTTCAAACAAA
AGTAATAAAATTAAATCAATAATTAAAAAAATAAATAAATAAAAGTATATTTTAAAAATA
AAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 3.21
Translated Amino Acid sequence 
---EEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASPLSVISGGDKTNNTLKPKQ
TTKRF*ywwstr*snklik****kkkkikkk*kknisnksnkiksiikkink*kyilkik
kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---*rssffissttiwftk*yqcyln*kiitfnfc*tnfcfsiicylww**nqqhfktkt
nyqkvlilvvnqviqqin*iiiikkeknkkkikkkyfkqk**n*inn*knk*ikvyfknk
kkkkkk


Frame B:
---EEARSLLVPPPSGSPNDINAISIERLSPLTFVKQTSASPLSVISGGDKTNNTLKPKQ
TTKRF*ywwstr*snklik****kkkkikkk*kknisnksnkiksiikkink*kyilkik
kkkkkk


Frame C:
---kklvly*fhhhlvhqmismlsqlkdyhl*lllnkllllhyllslvvikpttl*nqnk
lpkgfniggqpgnptn*lnnnnkkrkk*kknkkkifqtkviklnq*lkk*inksif*k*k
kkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG427 (SSG427Q) /CSM/SS/SSG4-B/SSG427Q.Seq.d/                        432   e-120
SSL263 (SSL263Q) /CSM/SS/SSL2-C/SSL263Q.Seq.d/                        416   e-115
SSI473 (SSI473Q) /CSM/SS/SSI4-D/SSI473Q.Seq.d/                        416   e-115
SSE676 (SSE676Q) /CSM/SS/SSE6-D/SSE676Q.Seq.d/                        416   e-115
SSC836 (SSC836Q) /CSM/SS/SSC8-B/SSC836Q.Seq.d/                        416   e-115
SSA564 (SSA564Q) /CSM/SS/SSA5-C/SSA564Q.Seq.d/                        416   e-115
SLE102 (SLE102Q) /CSM/SL/SLE1-A/SLE102Q.Seq.d/                        416   e-115
SHL184 (SHL184Q) /CSM/SH/SHL1-D/SHL184Q.Seq.d/                        416   e-115
SHK234 (SHK234Q) /CSM/SH/SHK2-B/SHK234Q.Seq.d/                        416   e-115
SHG849 (SHG849Q) /CSM/SH/SHG8-C/SHG849Q.Seq.d/                        416   e-115
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds.   353   e-111  2
AX251513|AX251513.1 Sequence 481 from Patent WO0168912.            48   0.090  1
BE470067|BE470067.1 IpHdk03092 Head kidney cDNA library Ictalurus punctatus cDNA 5' similar to Dual specificity phosphatase 10 (DUSP10), mRNA sequence.    48   0.090  1
AP001561|AP001561.4 Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete sequences.    46   0.35   2
AX344572|AX344572.1 Sequence 23 from Patent WO0200932.             46   0.35   1
AC106389|AC106389.4 Rattus norvegicus clone CH230-140G24, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46   0.35   1
AC106668|AC106668.4 Rattus norvegicus clone CH230-101D9, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    46   0.35   1
BE021617|BE021617.1 sm60c03.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-8285 5' similar to TR:O81784 O81784 HYPOTHETICAL 36.0 KD PROTEIN. ;, mRNA sequence.    46   0.35   1
AC111639|AC111639.4 Rattus norvegicus clone CH230-100I8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46   0.35   1
AW620673|AW620673.1 sj08c01.y1 Gm-c1032 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1032-1273 5' similar to TR:O81784 O81784 HYPOTHETICAL 36.0 KD PROTEIN. ;, mRNA sequence.    46   0.35   1
dna update 2004. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF159954_4(EF159954|pid:none) Nostoc sp. ATCC 53789 cryptophycin...    33   2.4
protein update 2009. 1.30
PSORT 

 psg: 0.75  gvh: 0.60  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSG427 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG427Z
3' end seq. 
>SSG427Z.Seq
----------ATGAAGAAGCTCGTTCTTTATTAGTTCCACCACCATCTGGTTCACCAAAT
GATATCAATGCTATCTCAATTGAAAGATTATCACCTTTAACTTTTGTTAAACAAACTTCT
GCTTCTCCATTATCTGTTATCTCTGGTGGTGATAAAACCAACAACACTTTAAAACCAAAA
CAAACTACCAAAAGGTTTTAATATTGGTGGTCAACCAGGTAATCCAACAAATTAATTAAA
TAATAATAATAAAAAAAGAAAAAAATAAAAAAAAAATAAAAAAAAAATATTTCAAACAAA
AGTAATAAAATTAAATCAATAATTAAAAAAATAAATAAATAAAAGTATATTTTAAAAATA
AAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 372
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -