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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG418
Library SS
(Link to library)
Clone ID SSG418
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14271-1
Original site URL
Representative seq. ID SSG418Z
(Link to Original site)
Representative DNA sequence 
>SSG418 (SSG418Q) /CSM/SS/SSG4-A/SSG418Q.Seq.d/
XXXXXXXXXXTCAATTATTGAATTTTTAATTACATATAGAAGAAATAGAGCAAGATTGAA
TCAAGCAATTGCAAATCATCAACAACAAGCTAAAGGTACTGAATTGTATGACCTATTTGC
AAGAGAAGATTTCAATAATCCTGAAGATGCAGCTGCTTATGATTTGGAAAAGGGTAAAGA
TCCAAATTATATTCATCAAGACTTCGAAATGCAACCAGTTCAAGAAGCCTAAAAAATAAT
AATAATAAAAATAATAAAAACAATAATAATAATAATAAAACAAC
sequence update 1998. 3.21
Translated Amino Acid sequence 
---IIEFLITYRRNRARLNQAIANHQQQAKGTELYDLFAREDFNNPEDAAAYDLEKGKDP
NYIHQDFEMQPVQEA*kiiiikiiktiiiiikq
Translated Amino Acid sequence (All Frames) 
Frame A:
---qllnf*lhieeieqd*ikqlqiinnklkvlncmtylqekisiilkmqllmiwkrvki
qiifiktskcnqfkkpkk****k**kq*****nn


Frame B:
---ny*ifnyi*kk*skiessncksstts*ry*iv*pickrrfq*s*rcscl*fgkg*rs
klyssrlrnatssrslknnnnknnknnnnnnkt


Frame C:
---IIEFLITYRRNRARLNQAIANHQQQAKGTELYDLFAREDFNNPEDAAAYDLEKGKDP
NYIHQDFEMQPVQEA*kiiiikiiktiiiiikq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG418 (SSG418Q) /CSM/SS/SSG4-A/SSG418Q.Seq.d/                        434   e-121
SSM587 (SSM587Q) /CSM/SS/SSM5-D/SSM587Q.Seq.d/                        410   e-114
SSK857 (SSK857Q) /CSM/SS/SSK8-C/SSK857Q.Seq.d/                        410   e-114
SSG530 (SSG530Q) /CSM/SS/SSG5-B/SSG530Q.Seq.d/                        410   e-114
SSG196 (SSG196Q) /CSM/SS/SSG1-D/SSG196Q.Seq.d/                        410   e-114
SSB815 (SSB815Q) /CSM/SS/SSB8-A/SSB815Q.Seq.d/                        410   e-114
SSL636 (SSL636Q) /CSM/SS/SSL6-B/SSL636Q.Seq.d/                        389   e-107
CHD676 (CHD676Q) /CSM/CH/CHD6-D/CHD676Q.Seq.d/                        200   8e-51
SSL351 (SSL351Q) /CSM/SS/SSL3-C/SSL351Q.Seq.d/                        178   3e-44
FC-BI05 (FC-BI05Q) /CSM/FC/FC-BI/FC-BI05Q.Seq.d/                       38   0.069
own update 2002.12.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017164|AE017164.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 4 of 6 of the complete genome.    42   0.004  6
CK131331|CK131331.1 AT07973.3prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT07973 3 similar to Mov34: FBan0003416 GO:[26S proteasome (GO:0005837); multicatalytic endopeptidase (GO:0004299); multicatalytic endopeptidase (GO:0004299); proteolysis and peptidolysis (GO:0006508); proteolysis and peptidolysis [Description Truncated]: 08/14/2002, mRNA sequence.    40   0.17   2
BF499256|BF499256.1 AT13776.3prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT13776 3 similar to M64643: DMMOV34_2 Mov34 FBgn0002787 SWISS-PROT:P26270 M64643:112..1128, mRNA sequence.    40   0.18   2
BF502520|BF502520.1 AT18377.3prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT18377 3 similar to M64643: DMMOV34_2 Mov34 FBgn0002787 SWISS-PROT:P26270 M64643:112..1128, mRNA sequence.    40   0.19   2
CK661108|CK661108.1 LP20261.3prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP20261 3, mRNA sequence.    40   0.20   2
AC133309|AC133309.1 Rattus norvegicus clone CH230-5M21, *** SEQUENCING IN PROGRESS ***, 73 unordered pieces.    38   0.28   3
AY089283|AY089283.1 Drosophila melanogaster AT07973 full insert cDNA.    40   0.44   2
AC133031|AC133031.3 Rattus norvegicus clone CH230-283A9, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    38   0.52   4
AC124299|AC124299.1 Homo sapiens chromosome 8 clone RP11-99M20 map 8, LOW-PASS SEQUENCE SAMPLING.    36   0.53   3
CQ578666|CQ578666.1 Sequence 6424 from Patent WO0171042.           40   0.94   2
dna update 2004. 2.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54U35) RecName: Full=Uncharacterized transmembrane protein DDB...   147   1e-34
AL591688_2901(AL591688|pid:none) Sinorhizobium meliloti 1021 com...    33   3.1
protein update 2009. 1.30
PSORT 

 psg: 0.42  gvh: 0.27  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSG418 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSG418Z
3' end seq. 
>SSG418Z.Seq
----------TCAATTATTGAATTTTTAATTACATATAGAAGAAATAGAGCAAGATTGAA
TCAAGCAATTGCAAATCATCAACAACAAGCTAAAGGTACTGAATTGTATGACCTATTTGC
AAGAGAAGATTTCAATAATCCTGAAGATGCAGCTGCTTATGATTTGGAAAAGGGTAAAGA
TCCAAATTATATTCATCAAGACTTCGAAATGCAACCAGTTCAAGAAGCCTAAAAAATAAT
AATAATAAAAATAATAAAAACAATAATAATAATAATAAAACAAC
Length of 3' end seq. 274
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -